Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq40061 531 1e-146 seq1 107 6e-19 >seq40061 Length=156973 Score = 531 bits (588), Expect = 1e-146 Identities = 705/976 (72%), Gaps = 2/976 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||||||||| || || || |||||||| || || | |||||||| Sbjct 155 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 214 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 ||||| || | || |||||||| |||||||| || | || | | | | | |||| Sbjct 215 GCACGATTGATGATATCAGCCCAAGTGTTGATAACACGACCCTGACTGTCAACTACAGAT 274 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| | |||||||||||| ||| | || | |||| ||| Sbjct 275 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 334 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 || |||||||| |||||||| ||||| | |||||||| | ||| ||||| || || Sbjct 335 CAGATACCTACTACAGGCCAAGCAGCCAAGAAGAAATGTAAGGAACGAGAATTGTTGAAA 394 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| || |||||||| || ||||| ||||| Sbjct 395 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 454 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 |||||||||||||| || ||||||| || || | | |||||| || || | Sbjct 455 TCTTCCTCTTGACCGAATCTGTAACCCGCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 514 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| | ||| ||||||||| ||| | || || ||||| Sbjct 515 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 574 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || ||||||| ||||||||| ||||||||||| || ||||| || |||||||| || Sbjct 575 CCAGCTACACCCAACATGTGAAATGGATGCATAAGGATGTTGTGTTCCGCCTGGAATACA 634 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | |||| ||||||| || || ||||| || || |||||| ||||||| ||| || || Sbjct 635 ATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA 694 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070 |||| || || | | ||| |||||||| ||||| || |||||||| || || |||||| Sbjct 695 CCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 754 Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130 ||||| || | ||| || || || | |||||||||||||| || ||||||||| | Sbjct 755 GCAATCCAAGGACGCATACCCAGGCGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 814 Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190 || |||| | |||||| | || | || | | |||||||| ||||| | ||| Sbjct 815 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAC 874 Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250 ||||||| | || |||||||| || || || || || | ||||| || | || Sbjct 875 TCATCAACAGATGCCGCTTCCCATATCGGATAAAAATGCAAACCGATAGCTGCAGAAGTC 934 Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310 |||| | ||| || || || || ||||| ||||| | || || |||| || ||||| Sbjct 935 GGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACTGGTTCA 994 Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370 || || ||||| || || || || || || ||| ||||||||||| || || || Sbjct 995 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATGAATACAGAAGTT 1054 Query 22371 GCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATT 22429 |||| ||| ||| | || ||||| | || ||||||||||| | ||||||||||| | Sbjct 1055 GCGGTCAATAAGGTA-GGGATCATCAAAACACCGAACCATCCAATGTAAAGACGGTTTTC 1113 Query 22430 AGTAGAGGTGACCCAG 22445 ||| ||| | |||| Sbjct 1114 AGTGCTGGTTATCCAG 1129 >seq1 Length=68435666 Score = 107 bits (118), Expect = 6e-19 Identities = 226/333 (68%), Gaps = 7/333 (2%) Strand=Plus/Minus Query 21468 GATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGG 21527 ||||| | ||| || ||||||||||| || || | |||| ||| || || | ||| Sbjct 30150371 GATGCTATGTCTAGAGGGAAGTTGTGAGCATTACATTCATACATTACTTCCATATCAAAC 30150312 Query 21528 TTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGA 21587 || || | || | || |||| | || || | || || | || | | ||| | Sbjct 30150311 TTACCATGATTGATGATATCAGTCTAGATGGTAATAACATAACCCTGATTGTCTACATTA 30150252 Query 21588 GATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTA--GACACGCCAAGCGCAG 21645 | |||||| | ||||||||||| | ||| |||| ||| ||| || ||| || |||| Sbjct 30150251 GTTTGGTTGGAATTGAAACCATTTAGGTTAAAAGTCATAGTACTGATACGTAAA--GCAG 30150194 Query 21646 CAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATG--AAGACTACGGGAATT 21703 ||| | ||||| || || |||| ||||| | ||| ||||| ||| || ||||| Sbjct 30150193 GTAACTAGATACCGACTGCAAGCCAAGCAGCCAAAAATAAATGTTAAG-GAACAAGAATT 30150135 Query 21704 ATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATT 21763 || || ||||||||| | |||||| | ||||| | || || ||| | |||||||| Sbjct 30150134 GTTGAAACTAGCATATCGTGAGATAAATCTGCCAAATAAACCATGGGCACCTACAATATT 30150075 Query 21764 GTAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796 | ||| || || |||||| || ||||||| Sbjct 30150074 ATGAGTTTCGTCTACTTGACTGAATCTGTAACC 30150042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146138445290580