Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq40061 489 2e-133 seq14 96.9 4e-15 seq1239 95.1 1e-14 >seq40061 Length=156973 Score = 489 bits (542), Expect = 2e-133 Identities = 680/950 (72%), Gaps = 2/950 (0%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| ||||||||||| ||||| | ||||||||| ||||||||||| | ||| Sbjct 155 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 214 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | || | | |||| |||| || || | || | | ||||| || ||| Sbjct 215 GCACGATTGATGATATCAGCCCAAGTGTTGATAACACGACCCTGACTGTCAACTACAGAT 274 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| || ||||||||||| | |||||| ||||| || | ||||| | || || ||| Sbjct 275 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 334 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAT 124288 || | || ||| ||||| || | || | |||||| || | | || |||||||| Sbjct 335 CAGATACCTACTACAGGCCAAGCAGCCAAGAAGAAATGTAAGGAACGAGAATTGTTGAAA 394 Query 124289 GAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTT 124348 |||||| |||||||| | || ||||| ||||| || || ||||| || || || ||| Sbjct 395 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 454 Query 124349 TCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTG 124408 ||||| ||||| ||||| | ||||| || || || | || || ||||| ||| Sbjct 455 TCTTCCTCTTGACCGAATCTGTAACCCGCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 514 Query 124409 ATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATT 124468 || | | ||| || || | ||||||||||| || ||||| || || ||||| | Sbjct 515 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 574 Query 124469 CCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACG 124528 || ||||| || |||||| || |||||||| || ||||| || || || ||||| || Sbjct 575 CCAGCTACACCCAACATGTGAAATGGATGCATAAGGATGTTGTGTTCCGCCTGGAATACA 634 Query 124529 AACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGA 124588 | ||| |||||||||||||| || || || | ||||||||||||||||| || ||| Sbjct 635 ATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA 694 Query 124589 CCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACA 124648 |||| ||||| | ||||| ||||| ||||| | || || |||||||| |||||| Sbjct 695 CCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 754 Query 124649 CAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCT 124708 |||||||||||||| || | | | | |||||||||| | |||||||| Sbjct 755 GCAATCCAAGGACGCATACCCAGGCGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 814 Query 124709 GAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCAT 124768 | | ||||| | |||||| | || | | || ||||||||| ||||| || ||||| Sbjct 815 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAC 874 Query 124769 TCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGAT 124828 |||||||||| ||| |||||||| || || || || || | |||||||| || | Sbjct 875 TCATCAACAGATGCCGCTTCCCATATCGGATAAAAATGCAAACCGATAGCTGCAGAAGTC 934 Query 124829 GGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCT 124888 |||| || ||||||||||| || ||||| ||||| | | |||||| | |||||||| Sbjct 935 GGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACTGGTTCA 994 Query 124889 CTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGC 124947 | || || || ||||| || ||||| || ||||| || || | ||||| ||| | | Sbjct 995 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATGAATACA-GAAGT 1053 Query 124948 TGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAA 124997 ||| || | |||| || ||||| | |||||| ||||| |||| |||| Sbjct 1054 TGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAA 1103 Score = 349 bits (386), Expect = 4e-91 Identities = 709/1044 (68%), Gaps = 33/1044 (3%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||| || || || ||||||| || || ||||| || || Sbjct 34092 TTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 34033 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | || || || || || ||||| Sbjct 34032 ATCCTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGGATATTTTTGGTGTAGAA 33973 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || ||||| || || ||||| || || | Sbjct 33972 AGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCTTGGGAAACGAAGTCATAGGCACG 33913 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 |||||| || || || || || | || | || |||| | ||| | || || || Sbjct 33912 GAGGTTCAGAGCCAGGCCGACTACCCCAAGAGCACTCATCCATAAACCGGTTACTGGTAC 33853 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || | ||||| ||| ||||| | | ||| || ||||| || | ||||| || || || Sbjct 33852 AAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGA 33793 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| |||||| ||||| | || || || | || || Sbjct 33792 CCAAAAGCGGTTAGCAGTGACCATTGAATAAGTCTCTTCGGCTTGAGTTGGGTTAAAAGC 33733 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| |||| ||| | || ||| || || || ||| | | | Sbjct 33732 ACGGAA---TGTAT-TTGCA-----CCGTCACCATCTTC-GA---------ATAAAGTAT 33692 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 |||| || || ||||||||||| || ||||| | || | |||| || ||| ||||| Sbjct 33691 TTTCT--ACGGTAGCACCATGAATAGCGCATAGCAGAGCAGCGCCTAATACTCCGGCAAC 33634 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| ||||| || || || || ||||| | ||| | ||| | Sbjct 33633 TCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAACCCTTGGAAGAAGAGGATGAA 33574 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || ||||| || || || || || |||||||||| ||||| ||||| Sbjct 33573 TCGAAATATAGCTGCTACGCCAAAACTGGGCGCAAAGAACCAACCAGATTGACCCAGTGG 33514 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| ||||| || | | || || || || |||||||||||||| ||| || || Sbjct 33513 ATAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAATGCGATTGCATTATA 33454 Query 123526 AGGTC-TAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTC 123584 ||||| ||| | ||| || || | || ||||| | | ||| |||||||| |||| Sbjct 33453 AGGTCGCAATTGC-ACAGATCGAGCAAGTTCGAATTGACGTAACATAAAACCTATTAGTC 33395 Query 123585 CAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGA 123644 | || || ||||| | || ||||| |||| ||||| || | ||| |||||||| | Sbjct 33394 CGAAAACACCATGGAGAGCAACAAAAGTCCACAGACCGCCTAATTGACACCAACGAGTAA 33335 Query 123645 ATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGA--GACTATG---ACCCATTGCGTC 123699 | |||||||| ||||| ||||| || | || | || | || | | ||| || Sbjct 33334 AATCCCCTTGTGCCTCAGGGCCCCATAGTAGCAACAAGGAATGTGCTAAACTATT-CG-- 33278 Query 123700 ACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAAT 123759 |||| ||||| ||||| || || ||||| || || || | ||| ||| || | Sbjct 33277 --CAGGAGTGGAAACTGCAGCGGTCAAGAAATTGCAACCTTCCAAATAGGAACTGGCCAA 33220 Query 123760 ACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAG 123819 ||||| ||||||||||| || || || || || ||| |||||||| || | | | Sbjct 33219 TCCATGGGTATACCATGAAGTTACAAAAGTTGTACCTGTAAACCAACCTCCTAAAGCGAA 33160 Query 123820 ATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTT 123879 ||| |||||||| | || || || |||||||| |||| || || ||||| || ||| Sbjct 33159 ATAAGCACAAGGAAAGAGCAATAGGCCAGACCAGCCTACAAAAACGAAACGGTCCCTCCG 33100 Query 123880 TAACCAGTCGTCAAGAACATCAAA 123903 |||||| || || | || |||||| Sbjct 33099 TAACCAATCATCCATAATATCAAA 33076 >seq14 Length=24379743 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/251 (69%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 123272 TCTTC--ATACAATGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCAC 123329 ||||| ||| ||| | |||| || || ||||||||||| || ||||| | || | | Sbjct 16929370 TCTTCGAATAAAATATTTTCT--ACGGTAGCACCATGAATAGCGCATAGCAGAGCAGCGC 16929313 Query 123330 CTAGTATTCCTGCAACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTT 123389 ||| || ||| ||||| |||||||| |||||||| ||||| || || | || | || Sbjct 16929312 CTAATACTCCAGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATAAAACCTTT 16929253 Query 123390 GTATGAATAAGATATAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAAC 123449 | | || | ||| | |||| || | ||| ||||| || || || |||||||||| Sbjct 16929252 GGAAAAAAAGGATGAATAGAAATATAGTTGCTACACCAAAATTGGGCGCAAAGAACCAAC 16929193 Query 123450 TGTGCTGACCTAGTGGATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGA 123509 |||| | |||||| ||||| || || | || || || || |||||||| Sbjct 16929192 CAGATCGACCCAATGGATAAATCAGGAATATAGAAACAAAAACAGCAATTGGAGCAGAGA 16929133 Query 123510 ATGCGAGTGCG 123520 |||| | |||| Sbjct 16929132 ATGCAATTGCG 16929122 >seq1239 Length=80461 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 123299 GCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAACACCCATCATGTGA 123358 ||||||||||| | ||||| | || ||||| || ||| ||||| ||| ||| ||| Sbjct 69452 GCACCATGAATAGTGCATAGCAGAGCAGTACCTAATACTCCGGCAACTCCCGTCAAATGA 69393 Query 123359 AATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATAACGAAAGATTGCT 123418 ||||| ||||| | || || || ||||| | ||| | ||| | | ||| || ||| Sbjct 69392 AATGGGTTCAACATCCAATTATGAAACCCTTGGAAGAAGAGGATGAATCAAAATATAGCT 69333 Query 123419 GCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGGATAGATCAGAAAG 123478 || ||||| || ||||| ||||||||||| ||||| |||||||| || | || Sbjct 69332 GCAACACC---TG--GGTGCAAAGAACCAACTAGATTGACCCAGTGGATAAATGAAGAAT 69278 Query 123479 ATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTAAGGTC 123530 | | | || | || || | |||||||||||| ||| || ||| ||| Sbjct 69277 ACGGAAACAAAAATAGCAATTGGAACAGAGAATGCGATTGCATTATAAAGTC 69226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578708459313720