Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq40061 598 6e-166 seq14 174 2e-38 seq1239 140 4e-28 seq1 109 7e-19 >seq40061 Length=156973 Score = 598 bits (662), Expect = 6e-166 Identities = 715/968 (74%), Gaps = 2/968 (0%) Strand=Plus/Plus Query 26729 CAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAA 26788 ||||||| || || | || || || || || || | ||| || || || || | |||| Sbjct 150 CAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAA 209 Query 26789 GACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCA 26848 | |||||| |||| | || ||||||||||||| ||||||||||| |||| | Sbjct 210 GGTTAGCACGATTGATGATATCAGCCCAAGTGTTGATAACACGACCCTGACTGTCAACTA 269 Query 26849 CAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGG 26908 |||| || ||||| |||||||| || || ||||||||||| || | ||| | || | Sbjct 270 CAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAG 329 Query 26909 TGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGT 26968 |||||||||| || || || ||||| ||||| | |||||| || |||||||| || |||| Sbjct 330 TGAACCAGATACCTACTACAGGCCAAGCAGCCAAGAAGAAATGTAAGGAACGAGAATTGT 389 Query 26969 TGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGT 27028 |||| |||||||||||||||||| || || || || ||||| || || ||||| || | Sbjct 390 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTAT 449 Query 27029 AGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCT 27088 | || ||||| ||||||||||| | ||||| || || || ||||||| || | Sbjct 450 AAGTTTCTTCCTCTTGACCGAATCTGTAACCCGCATTAGCAGATTCGTTTTCAGTGGTTT 509 Query 27089 CACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGA 27148 | | || | ||| || |||| || ||||||||| ||| || || || |||| Sbjct 510 CCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGA 569 Query 27149 ATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGA 27208 |||| ||||| ||||| | |||||| || || ||||||||||| |||||||| ||||||| Sbjct 570 ATACACCAGCTACACCCAACATGTGAAATGGATGCATAAGGATGTTGTGTTCCGCCTGGA 629 Query 27209 ATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAAC 27268 |||||| |||| |||| ||||||||||| || || | ||||||| |||| |||||| | Sbjct 630 ATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTC 689 Query 27269 CTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATG 27328 ||||||| | ||| |||| | ||| || ||| | ||||| || || ||||| ||||||| Sbjct 690 CTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATG 749 Query 27329 CTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATAT 27388 | ||| ||||| ||||||||||| | || | |||||||||||||| ||||| | Sbjct 750 CAACAGCAATCCAAGGACGCATACCCAGGCGGAAACTAAGTTCCCACTCACGACCCATGT 809 Query 27389 AAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACA 27448 || | | || | | |||||| | || | || | ||||||| || || || | Sbjct 810 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATA 869 Query 27449 ACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTG 27508 |||||||||| | ||||| |||||||| || || || || || | |||||| || | Sbjct 870 ACCACTCATCAACAGATGCCGCTTCCCATATCGGATAAAAATGCAAACCGATAGCTGCAG 929 Query 27509 AACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGG 27568 || | || | || |||||||| || || ||||| ||||| | || ||||||| ||| | Sbjct 930 AAGTCGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACTG 989 Query 27569 GTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAG 27627 ||||||||||||| |||||||| || || || || || ||||| |||| |||||| ||| Sbjct 990 GTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATGAATACAG 1049 Query 27628 ACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGG 27687 | |||||| | || | || |||||||||| ||||||||||| |||| || | |||| Sbjct 1050 A-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAGACGG 1108 Query 27688 TTGTTAGT 27695 || | ||| Sbjct 1109 TTTTCAGT 1116 Score = 511 bits (566), Expect = 6e-140 Identities = 732/1022 (72%), Gaps = 8/1022 (1%) Strand=Plus/Minus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | || || | |||||| | || |||||| || || | Sbjct 34093 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 34034 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 | || || | |||||| |||| | || | ||| || | |||||||| ||||||| Sbjct 34033 GATCCTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGGATATTTTTGGTGTAGA 33974 Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCAC 23565 | |||||| | | |||||| || ||||| || ||||| || || ||||| |||| Sbjct 33973 AAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCTTGGGAAACGAAGTCATAGGCAC 33914 Query 23566 GAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAA 23625 | || || ||||| || || | | |||| || | | ||| | ||| | || || | Sbjct 33913 GGAGGTTCAGAGCCAGGCCGACTACCCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 33854 Query 23626 CAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTG 23685 |||| | ||||||||| || |||||||| |||||| ||| |||||||| |||||||| | Sbjct 33853 CAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGG 33794 Query 23686 ACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACG 23745 ||||||| || || || || ||||| ||||| ||||| || | ||||| | | || | Sbjct 33793 ACCAAAAGCGGTTAGCAGTGACCATTGAATAAGTCTCTTCGGCTTGAGTTGGGTTAAAAG 33734 Query 23746 CTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCAT 23805 | || || ||||| || |||||||| | | ||||| || || ||| | |||| Sbjct 33733 CACGGAATGTATTTGCACCGTCACCATCTTCGAATAAAGTATTTTCTACGGTAGCACCAT 33674 Query 23806 GAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGT 23865 ||||||| | || || || | || | || || ||||||||||||||||| || |||| Sbjct 33673 GAATAGCGCATAGCAGAGCAGCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGT 33614 Query 23866 TGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACAC 23925 | | |||||| |||||||| || |||| |||||| | ||| | || || || || || | Sbjct 33613 TCAACGTCCAATTATGAAACCCTTGGAAGAAGAGGATGAATCGAAATATAGCTGCTACGC 33554 Query 23926 CGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACA 23985 | ||||| ||||||||||||||| || || |||| ||||| || ||||||||||| | Sbjct 33553 CAAAACTGGGCGCAAAGAACCAACCAGATTGACCCAGTGGATAAATCAGGAATACAGAAA 33494 Query 23986 CGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACG-GATTCCAATTAGA 24044 | || |||||||| ||| |||| || || || ||||| || || || ||| || ||| Sbjct 33493 CAAAAACAGCAATTGGAGCAGAGAATGCGATTGCATTATAAGGTCGCAATTGCA--CAGA 33436 Query 24045 -CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGC 24103 || || ||||| || |||||||||||||||||||| ||| | || |||| |||||||| Sbjct 33435 TCGAGCAAGTTCGAATTGACGTAACATAAAACCTATTAGTCCGAAAACACCATGGAGAGC 33376 Query 24104 AACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGG 24163 |||||| | ||| || || || | ||| ||| || ||| |||||||| | |||||| Sbjct 33375 AACAAAAGTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCCCCTTGTGCCTCAGG 33316 Query 24164 ACCCCAAAGTAG-AAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCG 24222 ||||| ||||| || ||| ||||| | | | | ||||| || || || || || | Sbjct 33315 GCCCCATAGTAGCAACAAG-GAATGTGCTAAACTATTCGCAGGAGTGGAAACTGCAGCGG 33257 Query 24223 T-AAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTA 24281 | |||||| || ||| || | ||||||||| || | ||||||||| ||||| || Sbjct 33256 TCAAGAAA-TTGCAACCTTCCAAATAGGAACTGGCCAATCCATGGGTATACCATGAAGTT 33198 Query 24282 ACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGG 24341 ||||||| ||| || |||| |||||| || | || | ||||||| |||| || | Sbjct 33197 ACAAAAGTTGTACCTGTAAACCAACCTCCTAAAGCGAAATAAGCACAAGGAAAGAGCAAT 33138 Query 24342 AGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCA 24401 || |||||||| || ||||| || || || |||| | ||| || |||| || ||| Sbjct 33137 AGGCCAGACCAGCCTACAAAAACGAAACGGTCCCTCCGTAACCAATCATCCATAATATCA 33078 Query 24402 AA 24403 || Sbjct 33077 AA 33076 >seq14 Length=24379743 Score = 174 bits (192), Expect = 2e-38 Identities = 252/356 (71%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 23664 AACGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCC 23723 || |||||| | |||||||| |||||||| | | || ||||| ||| ||||| Sbjct 16929478 AAAGCAACCTCAAAGATTTGGGACCAAAAGTAGTGAGTAGTGACCATTACATAAGTCTCT 16929419 Query 23724 TCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGT 23783 || | ||||| | | || || | || || ||||| || |||||||| | | Sbjct 16929418 TCAGCTTGAGTTGGGTTAAAAGCATGGAATGTATTTGCACCGTCACCATCTTCGAATAAA 16929359 Query 23784 GTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCA 23843 |||| || || ||| | ||||||||||| | || || || | || | || |||||| Sbjct 16929358 ATATTTTCTACGGTAGCACCATGAATAGCGCATAGCAGAGCAGCGCCTAATACTCCAGCA 16929299 Query 23844 ACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGG 23903 |||||||||||||| || ||||| | |||||| |||| ||| | |||| || || | | Sbjct 16929298 ACTCCCATCATATGAAATGGGTTCAACGTCCAATTATAAAACCTTTGGAAAAAAAGGATG 16929239 Query 23904 AACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAA 23963 || || || | || ||||| ||| | ||||||||||||||| || | ||||| Sbjct 16929238 AATAGAAATATAGTTGCTACACCAAAATTGGGCGCAAAGAACCAACCAGATCGACCCAAT 16929179 Query 23964 GGATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGC 24019 ||||| || ||||||| ||| || || |||||||| ||| |||| || ||||| || Sbjct 16929178 GGATAAATCAGGAATATAGAAACAAAAACAGCAATTGGAGCAGAGAATGCAATTGC 16929123 >seq1239 Length=80461 Score = 140 bits (154), Expect = 4e-28 Identities = 226/322 (70%), Gaps = 11/322 (3%) Strand=Plus/Minus Query 23802 CCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAG 23861 |||||||||| | || || || || | || || ||||||||| ||| ||| || Sbjct 69449 CCATGAATAGTGCATAGCAGAGCAGTACCTAATACTCCGGCAACTCCCGTCAAATGAAAT 69390 Query 23862 GGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCA 23921 ||||| | | |||| |||||||| || |||| |||||| | ||| | || || || ||| Sbjct 69389 GGGTTCAACATCCAATTATGAAACCCTTGGAAGAAGAGGATGAATCAAAATATAGCTGCA 69330 Query 23922 ACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACA 23981 ||||| | || |||||||||||| || || |||| ||||| |||| |||||| Sbjct 69329 ACACC-----TGGGTGCAAAGAACCAACTAGATTGACCCAGTGGATAAATGAAGAATACG 69275 Query 23982 GACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGT--AGGGACGGATTCCAA 24039 || || || | |||||| ||| |||| || || || ||||| | || || ||| | | Sbjct 69274 GAAACAAAAATAGCAATTGGAACAGAGAATGCGATTGCATTATAAAGTCACAAATTGC-A 69216 Query 24040 TTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGA 24099 | | || ||| || | |||||| |||||||||| ||| | |||| |||| Sbjct 69215 CAAATCAAGCAGGTTTGAATTAACGTAATGTAAAACCTATTAGT---CTGACACCATGGA 69159 Query 24100 GAGCAACAAAGGACCAAAGCCC 24121 |||||||||| | ||| | ||| Sbjct 69158 GAGCAACAAAAGCCCACAACCC 69137 >seq1 Length=68435666 Score = 109 bits (120), Expect = 7e-19 Identities = 191/277 (69%), Gaps = 1/277 (0%) Strand=Plus/Minus Query 26729 CAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAA 26788 ||||||| || || | | || || || || || | ||| || || || || | |||| Sbjct 3686739 CAGCAGCTAGGTCTAGAGAGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAA 3686680 Query 26789 GACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCA 26848 || ||| | |||| | || | |||||| |||| |||| || ||| |||| | Sbjct 3686679 GATTAGCGCAATTGATGATATCAGTCCAAGTATTGATAACACAACTCTGACGGTCAACTA 3686620 Query 26849 CAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGG 26908 |||| || ||||| |||||| | || || || |||| ||| || | || | || | Sbjct 3686619 CAGATTGGTTGAA-TTGAAATCATTTAGGTTAAAAGTCATAGTACTAATACTTAAAGCAG 3686561 Query 26909 TGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGT 26968 |||||||||| | || || ||||| |||| | |||||| || ||| || | || |||| Sbjct 3686560 TGAACCAGATACTTACTACAGGCCAAACAGCCAAGAAGAAATGTAAGAAATGAGAATTGT 3686501 Query 26969 TGAATGAAGCATATTGGAAGATCAAACGACCGAAGTA 27005 |||| || ||||| ||||||||| || || || || Sbjct 3686500 TGAAACTAGTATATTAGAAGATCAATCGGCCAAAATA 3686464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665161145360520