Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4 125 9e-24 seq16 123 3e-23 seq3 113 5e-20 seq67 107 2e-18 seq15 95.1 1e-14 >seq4 Length=57251647 Score = 125 bits (138), Expect = 9e-24 Identities = 232/336 (69%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || || || | || ||| || || || |||||| || ||| ||||| Sbjct 44156917 CCAGGAACTGGGAAAACATTGCTTGCCAAGGCAATTGCTGGTGAAGCAGGTGTTCCATTT 44156976 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || || | |||| | | | ||||| ||||||||||||||||| ||||| | | || Sbjct 44156977 TTCTCAATT-TCTGGCTCTGAGTTTGTAGAGATGTTTGTTGGTGTAGGTGCTTCACGAGT 44157035 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 || ||||| ||| | | ||| || ||| || || || | || | |||||||| Sbjct 44157036 CCGTGATCTTTTTAAGAAGGCCAAAGAGAATGCGCCTTGCATCATTTTTGTGGATGAGAT 44157095 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551 |||||| || || | |||| | | | || | | | | | ||||| ||||||||| Sbjct 44157096 TGATGCTGTTGGAAGGCAAAGAGGAACAGGAATTGGAGGTGGG--AATGATGAGAGAGAA 44157153 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTG 175611 ||||| ||||||| || | || ||||||||||| ||||| | ||||| || | Sbjct 44157154 CAAACTCTTAATCAGCTGTTGACTGAGATGGATGGGTTTGAAGGAAATACTGGAATAATT 44157213 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 || ||||| ||||| ||||| | |||||||| ||| Sbjct 44157214 GTAATTGCAGCCACCAATCGTGCAGATATCCTAGAT 44157249 >seq16 Length=21371083 Score = 123 bits (136), Expect = 3e-23 Identities = 321/487 (66%), Gaps = 2/487 (0%) Strand=Plus/Plus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||||| || | || | |||||| | || || ||| | ||||| ||| | || Sbjct 17436441 TGATGTTGCTGGAGTAGATGAAGCCAAACAGGATTTTATGGAGGTGGTGGAGTTTTTGAA 17436500 Query 175251 GCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGG 175310 | |||| || |||| | || | ||||| || || ||| | ||||| | || Sbjct 17436501 GAAACCTGAAAGATTTACTGCAGTAGGTGCTCGTATTCCTAAAGGTGTTCTTCTTGTTGG 17436560 Query 175311 TAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCC 175370 | || || || || ||||| | || || || || || || ||| || ||| || Sbjct 17436561 TCCTCCGGGAACTGGGAAGACTTTGCTTGCTAAGGCAATTGCAGGAGAAGCAGGTGTTCC 17436620 Query 175371 ATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAA 175429 ||| || || | || | | | ||||| |||||||||||||| || ||||| Sbjct 17436621 ATTTTTCTCAATT-TCAGGGTCTGAGTTTGTAGAGATGTTTGTTGGAGTTGGTGCTTCGC 17436679 Query 175430 GGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATG 175489 | ||||| ||||| || | | ||| || ||| ||||| ||||| || |||||| Sbjct 17436680 GAGTTCGTGATCTTTTCAAGAAGGCCAAAGAGAATGCTCCATGCATTGTGTTTGTTGATG 17436739 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAG 175549 | |||||||| || || | |||| | | | ||| | || |||||| || |||| Sbjct 17436740 AAATTGATGCTGTTGGAAGGCAAAGAGGAACAGGTATTGGAGGAGGAAATGATGAAAGAG 17436799 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTG 175609 ||||||| ||||||| || | || ||||||||||| ||||| | ||||| ||| Sbjct 17436800 AACAAACTCTTAATCAGCTTTTGACAGAGATGGATGGTTTTGAAGGAAATACTGGTATTA 17436859 Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTC 175669 | || ||||| ||||| || || | || || || ||| ||| | || | || || | Sbjct 17436860 TAGTAATTGCAGCCACAAACCGTGCAGACATTCTAGATTCCGCTTTGCTGAGGCCCGGAC 17436919 Query 175670 GTTTTGA 175676 | ||||| Sbjct 17436920 GCTTTGA 17436926 Score = 114 bits (126), Expect = 2e-20 Identities = 279/416 (67%), Gaps = 10/416 (2%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| |||| ||| | | ||| || || || |||||||| ||| Sbjct 21069288 GGCGCCAAGATCCCCAAAGGCTGCCTCTTGGTCGGTCCTCCCGGCACCGGAAAGACTCTC 21069229 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || ||||| ||| |||| || || | || || ||| || |||| | ||| | | Sbjct 21069228 CTGGCCCGGGCCGTCGCCGGCGAGGCCGGGGTGCCCTTCTTCTCGTGCGCCGCCTCCGAA 21069169 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || |||||| | || ||||| || || || | || || ||| | || || | ||| Sbjct 21069168 TTCGTGGAGCTCTTCGTTGGAGTCGGAGCTTCTCGTGTCCGGGATTTGTTCGAGAAGGCC 21069109 Query 175456 --CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAAC 175513 ||||| | || || ||||||||||| || ||||||||||||||||| | ||| | Sbjct 21069108 AAGTCGAAAGCC--CCCTGCATTGTCTTCATCGACGAGATTGATGCGGTGGGGAGGCAGC 21069051 Query 175514 GCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACT 175571 | | || || | | | | | ||||| ||||| || || || |||||||| || | Sbjct 21069050 GGGGGGCCGGTCTCGGAGG--TGGGAATGATGAGAGGGAGCAGACTATTAATCAGCTCTT 21068993 Query 175572 CACCGAGATGGATGGCTTTGACAATG-AGACTGGCATTGTGGTTATTGCGGCCACTAATC 175630 || || |||||||| ||| | | | | ||| | | ||| |||| || || || Sbjct 21068992 GACGGAAATGGATGG-TTTCTCGGGGAATAGTGGGGTCATTGTTCTTGCAGCGACCAACA 21068934 Query 175631 GCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGATC 175686 | |||| | ||||||| || || || || || || || ||||| ||| || || Sbjct 21068933 GGCCGGATGTGCTTGATGCTGCTCTGCTGCGGCCTGGCCGATTTGACCGCCAGGTC 21068878 >seq3 Length=60060032 Score = 113 bits (124), Expect = 5e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || |||||||||||||| |||| ||||| || ||||| ||||||||||| || || Sbjct 42479951 TCTTTCGCCGAGCGCCTCGTTGCATTTGCCGCCGTTGAGGGGATCTTCTTCTCTGGCTCC 42479892 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||| | || | ||| | |||||||| ||||||||||| || || |||||| || Sbjct 42479891 TTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCTCCAAC 42479832 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || || || || ||||| |||||| Sbjct 42479831 GAGCTCATCTCTCGCGACGAGGGCCTCCAC 42479802 >seq67 Length=1088699 Score = 107 bits (118), Expect = 2e-18 Identities = 143/198 (72%), Gaps = 7/198 (4%) Strand=Plus/Minus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCG--CTCCTTCGCCGAG 65079 ||||||||| | ||||| | | ||| |||| | |||| ||||||||| ||| Sbjct 292178 GAAGAAGGCCCAGTGGGCGCTCCAGTGGATTGAGTC-----CTCGGACTCCTTCGCGGAG 292124 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 ||||| | || || | ||| ||||| |||||||||||||| || ||||| | || Sbjct 292123 CGCCTCGTGGCCTTCTCTGCTGTTGAGGGGATCTTCTTCTCCGGCTCCTTCTGTTCCATC 292064 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||| | |||||||| || |||||||| || || |||||| || || || || ||| Sbjct 292063 TTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTGACCTTCTCCAACGAGCTCATCTCC 292004 Query 65200 CGAGATGAGGGTCTCCAC 65217 || || ||||| |||||| Sbjct 292003 CGCGACGAGGGCCTCCAC 291986 >seq15 Length=24314465 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 175402 GAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAA 175461 ||||||||||| ||||| || || || ||| | ||| | ||| | | || | | Sbjct 15394875 GAGATGTTTGTCGGTGTAGGGGCTTCGAGAGTTAGGGATTTGTTTAATAAGGCAACAGCA 15394934 Query 175462 AATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCT 175521 ||| |||||| | ||||||||||| ||||||||||| || || | |||| | | || Sbjct 15394935 AATTCTCCATGTCTGGTCTTCATTGACGAGATTGATGCAGTAGGAAGGCAAAGAGGAACT 15394994 Query 175522 GG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGA 175579 || | | | | || |||||| || |||||||||||| | || ||||| || || || | Sbjct 15394995 GGAATTGGAGG--AGGAAATGATGAAAGAGAACAAACATTGAACCAACTGCTTACTGAAA 15395052 Query 175580 TGGATGGCTT 175589 ||||||| || Sbjct 15395053 TGGATGGTTT 15395062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596270860315680