Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq40061 531 1e-146 seq1 107 6e-19 >seq40061 Length=156973 Score = 531 bits (588), Expect = 1e-146 Identities = 705/976 (72%), Gaps = 2/976 (0%) Strand=Plus/Minus Query 41242 CTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCC 41301 |||| | ||| ||| | ||||||||||| | ||||||||||| || | ||||| || Sbjct 1129 CTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCC 1070 Query 41302 GTGCCTCCTTG-CCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTG 41360 | ||| ||| |||| || || || ||||||||||| ||| || || || || | Sbjct 1069 -TACCTTATTGACCGCAACTTCTGTATTCATTATCGCCTTCATTGCTGCTCCTCCAGTAG 1011 Query 41361 ACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATAT 41420 | || ||||| || || ||||| || |||| || || | ||||| ||||| || || | Sbjct 1010 ATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCT 951 Query 41421 CAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAG 41480 | || ||| | |||||| | || ||||| | || || || || || ||||||| Sbjct 950 CTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGATATGGGAAG 891 Query 41481 CTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACT 41540 | || | ||||||| ||| | ||||| |||||||| | | || | || | |||| Sbjct 890 CGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACT 831 Query 41541 TCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGA 41600 || | |||| || | ||||||||| || |||||||||||||| | || || || | Sbjct 830 TCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGCCTGGGTA 771 Query 41601 TGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCC 41660 || | || ||||| |||||| || || |||||||| || ||||| |||||||| ||| Sbjct 770 TGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCT 711 Query 41661 TTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCA 41720 | | || || |||| || || ||| ||||||| |||||| || || ||||| || | Sbjct 710 TGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTA 651 Query 41721 CCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACA 41780 | ||||||| |||| | || |||||||| || ||||| || ||||||||||| ||||||| Sbjct 650 CTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATCCATTTCACA 591 Query 41781 TGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGG 41840 || ||||||| || || ||||| || || | ||| ||||||||| ||| | ||| Sbjct 590 TGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGG 531 Query 41841 TCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGT 41900 | || || | || | || || |||||| | | || || ||||||| | Sbjct 530 TAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGGGTTACAGAT 471 Query 41901 TTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTA 41960 | |||||||||||||| ||||| ||||| || |||||||| || |||||||| || | | Sbjct 470 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGA 411 Query 41961 TCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGC 42020 |||||||||||||||| || || ||||| ||| | |||||||| | ||||| |||| Sbjct 410 TCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGGCTGCTTGGC 351 Query 42021 CTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATG 42080 |||| |||||||| ||||| |||| | || | ||| |||||||||||| | |||| Sbjct 350 CTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATG 291 Query 42081 GTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTG 42140 ||||||| || ||||||||| | | | | | || | || |||||||| ||||||| Sbjct 290 GTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACACTTGGGCTG 231 Query 42141 ACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACT 42200 | || | || ||||| |||||||| | || || |||||||| || || || ||||||| Sbjct 230 ATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCACAACT 171 Query 42201 TCCCGCTTGACCTTGC 42216 |||| || ||||| || Sbjct 170 TCCCTCTAGACCTAGC 155 >seq1 Length=68435666 Score = 107 bits (118), Expect = 6e-19 Identities = 226/333 (68%), Gaps = 7/333 (2%) Strand=Plus/Plus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||||| || |||||| || || ||| | |||||||| | ||| || || | ||| Sbjct 30150042 GGTTACAGATTCAGTCAAGTAGACGAAACTCATAATATTGTAGGTGCCCATGGTTTATTT 30150101 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTT--CATTTCTTTC 42008 || | |||||| | ||||||||| || || ||||| || ||| ||||| ||| Sbjct 30150102 GGCAGATTTATCTCACGATATGCTAGTTTCAACAATTCTTGTTC-CTTAACATTTATTTT 30150160 Query 42009 TTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTC--TACCATGGC 42066 | ||||| |||| || || ||||| | ||| |||| || ||| || ||| ||| | Sbjct 30150161 TGGCTGCTTGGCTTGCAGTCGGTATCTAGTTACCTGC--TTTACGTATCAGTACTATGAC 30150218 Query 42067 TTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGAT 42126 ||| ||| | ||||||||||| | |||||| || ||| | | || | || || Sbjct 30150219 TTTTAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACAATCAGGGTTATGTTAT 30150278 Query 42127 CAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCG 42186 | || || | |||| || | || | || || ||| | || || ||| |||| | Sbjct 30150279 TACCATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGGAAGTAATGTATGAATG 30150338 Query 42187 GAACGCACACAACTTCCCGCTTGACCTTGCATC 42219 || || ||||||||||| || ||| | ||||| Sbjct 30150339 TAATGCTCACAACTTCCCTCTAGACATAGCATC 30150371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146144842245944