Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq40061 574 1e-159 seq1 111 5e-20 >seq40061 Length=156973 Score = 574 bits (636), Expect = 1e-159 Identities = 737/1008 (73%), Gaps = 6/1008 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || || |||||| | || ||| | ||||||||||| |||| ||||| Sbjct 1146 TGGGGTCGCTTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTC 1087 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTT-ATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | | || || | ||| || ||| |||| |||| Sbjct 1086 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTCATTATCGCCTTCA 1029 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||||| ||||| ||||| |||||||| ||||||||||| || ||||| ||||| || | Sbjct 1028 TTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTT 969 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 |||| ||||| || |||||||||||| | | || | | || || || | |||| Sbjct 968 ATGGAAACAATATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATT 909 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | ||| |||| |||||||| | |||| || ||| | ||||||||||| |||||| Sbjct 908 TTTATCCGATATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATG 849 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 |||| | || | |||||| | | ||| | | |||| |||| || || ||||||| Sbjct 848 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAAC 789 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || | ||| || || ||| | || ||||| |||||| || || || ||||| || | Sbjct 788 TTAGTTTCCGCCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 729 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 | || ||||| || ||| | |||| || |||| ||||| ||| || ||||| |||| Sbjct 728 CTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGC 669 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 || | || || || ||||| |||||||||||| | || |||||||| ||||| ||||| | Sbjct 668 CTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCC 609 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 |||||||||| || || ||| | ||||| || || ||||| || || || | ||| | Sbjct 608 TTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTG 549 Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937 ||||||||||| | || |||||| | | | | ||||| |||||||||||| Sbjct 548 CTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTG 489 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 ||| || |||| |||||||||||||| || |||||||| || || || || |||| Sbjct 488 CTAATGCGGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATG 429 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCAC 43056 |||| ||||| || | |||||||||||||| | |||| || ||| ||| || || || Sbjct 428 GTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCCTTACAT 370 Query 43057 TTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACT 43116 ||||| | || |||||||| || || || || ||||||||| || | || | |||||| Sbjct 369 TTCTTCTTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACT 310 Query 43117 ATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCAT 43176 ||||| || ||| | |||||||| || || |||||||| | ||||| | |||| || | Sbjct 309 ATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGT 250 Query 43177 GTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCAC 43236 || ||| |||||||||||||| | |||||||| |||||||| | || || ||||| Sbjct 249 GTTATCAACACTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCAT 190 Query 43237 GAGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGGTT 43284 || || ||||| || |||||||| || || || || | || || ||| Sbjct 189 GAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTCGAAGTT 142 >seq1 Length=68435666 Score = 111 bits (122), Expect = 5e-20 Identities = 246/363 (68%), Gaps = 7/363 (2%) Strand=Plus/Plus Query 42916 GAAACGACTGAAAACGAAAGCCAA--AATTATGGCTACAAGTTCGGTCAAGAGGAGGAGA 42973 ||||| ||| |||| || | | | ||| | || |||| ||| |||||| || || | Sbjct 30150012 GAAACCACTAAAAATGA--GTCTACTAATGAAGGTTACAGATTCAGTCAAGTAGACGAAA 30150069 Query 42974 CTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGT 43033 || |||| ||||| | || ||||||| ||||| | |||||| | |||||| | || Sbjct 30150070 CTCATAATATTGTAGGTGCCCATGGTTTATTTGGCAGATTTATCTCACGATATGC-TAGT 30150128 Query 43034 TT-AATAATAGTCGCTCTTTG-CACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTG 43091 || || ||| | | || || || || ||| | || ||||||| | || || || | Sbjct 30150129 TTCAACAATTCTTGTTCCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTCGGTATCTA 30150188 Query 43092 GTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCA 43151 ||| || || | | ||||||||||| | |||||| | |||||||| || | ||||| Sbjct 30150189 GTTACCTGCTTTACGTATCAGTACTATGACTTTTAACCTAAATGGTTTCAATTCCAACCA 30150248 Query 43152 ATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGC 43211 | | ||| || |||||| | |||| || | | | | ||||||| | |||| || Sbjct 30150249 AACTAATGTAGACAATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGG 30150308 Query 43212 CAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 || ||| | || || ||| | || | ||||| || |||||||| || || | || Sbjct 30150309 TAAGTTTGATATGGAAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGACATAGC 30150368 Query 43272 ATC 43274 ||| Sbjct 30150369 ATC 30150371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143464517948428