Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq40061 443 6e-120 seq1 86.0 2e-12 >seq40061 Length=156973 Score = 443 bits (490), Expect = 6e-120 Identities = 687/976 (70%), Gaps = 4/976 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| || ||||| ||||| | || |||||| Sbjct 155 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 214 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || || || | | ||||||||| || || | || | | || ||||| || Sbjct 215 GCACGATTGATGATATCAGCCCAAGTGTTGATAACACGACCCTGACTGTCAACTACAGAT 274 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| || | ||||| | || || | | Sbjct 275 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 334 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| | |||||||| | ||||| || || ||| Sbjct 335 CAGATACCTACTACAGGCCAAGCAGCCAAGAAGAAATGTAAGGAACGAGAATTGTTGAAA 394 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || ||||| || |||||||| || Sbjct 395 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 454 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || ||| || | | || || ||||| Sbjct 455 TCTTCCTCTTGACCGAATCTGTAACCCGCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 514 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | || || ||||| || ||||||||| ||| || | || ||||| || Sbjct 515 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 574 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| ||||| ||| || ||||| ||||| || || || ||||| || |||||||| Sbjct 575 CCAGCTACACCCAACATGTGAAATGGATGCATAAGGATGTTGTGTTCCGCCTGGAATACA 634 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||| ||||| ||||||||||| || || | |||||| |||||| ||||| ||||| Sbjct 635 ATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA 694 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | ||| || | ||||| || || ||| || | | || |||| |||||||||| Sbjct 695 CCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 754 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || || | | || |||||||||| | || || Sbjct 755 GCAATCCAAGGACGCATACCCAGGCGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 814 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| |||| Sbjct 815 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAC 874 Query 26597 TCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | |||| |||||||| ||||| |||||||| | ||||| || ||| | Sbjct 875 TCATCAACAGATGCC-GCTTCCCATATCGGATAAAAATGCAAACCGATAGCTGCAGAAGT 933 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || ||||||||||| || | || || || |||||||| || Sbjct 934 CGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACTGGTTC 993 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTAT-AAAACATGTAG 26774 ||| || ||||| |||||||| || || || || |||||||| | || || ||| | || Sbjct 994 ACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATGAATACA-GAAG 1052 Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | || | | |||| || ||||| | || ||||||||||| | || |||||||| | Sbjct 1053 TTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAGACGGTTTT 1112 Query 26835 CAGTACTTGTAACCCA 26850 |||| || || | ||| Sbjct 1113 CAGTGCTGGTTATCCA 1128 >seq1 Length=68435666 Score = 86.0 bits (94), Expect = 2e-12 Identities = 185/273 (68%), Gaps = 3/273 (1%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || | ||||| ||||||||||| || ||||| ||||| | || || ||| Sbjct 3686734 GCTAGGTCTAGAGAGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGATTA 3686675 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || | || | | ||||| ||| ||| || | | | | || ||||| || Sbjct 3686674 GCGCAATTGATGATATCAGTCCAAGTATTGATAACACAACTCTGACGGTCAACTACAGAT 3686615 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || ||| ||||||||||||| | ||| || | |||| | || || | | Sbjct 3686614 TGGTTGAA-TTGAAATCATTTAGGTTAAAAGTCATAGTACTAATACTTAAAGCAGTGAAC 3686556 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATG-AAGAGAACGGCTGTTATTAAA 26115 || || | || || |||||| ||| | |||||||| |||| || | || || || Sbjct 3686555 CAGATACTTACTACAGGCCAAACAGCCAAGAAGAAATGTAAGA-AATGAGAATTGTTGAA 3686497 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTA 26148 ||| | ||| | || || |||| ||||| || Sbjct 3686496 ACTAGTATATTAGAAGATCAATCGGCCAAAATA 3686464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147641729801120