Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq40061 612 2e-170 seq1 136 5e-27 >seq40061 Length=156973 Score = 612 bits (678), Expect = 2e-170 Identities = 728/987 (74%), Gaps = 0/987 (0%) Strand=Plus/Minus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| |||| |||| ||||| | || | || |||||||||||| | | Sbjct 1136 TCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGA 1077 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | || || | |||||| |||||||||||||||| |||| Sbjct 1076 TGATCCCTACCTTATTGACCGCAACTTCTGTATTCATTATCGCCTTCATTGCTGCTCCTC 1017 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| |||||||||||||||||||| || |||||||| || | ||||| ||||| | Sbjct 1016 CAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAATA 957 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | ||||||||||| || | || | ||| || || ||| | || || ||||| || | Sbjct 956 TTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGATAT 897 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| || ||||||||||||| |||||||| ||||||| | || | || Sbjct 896 GGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTC 837 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTC 155329 | |||||| | | || | | ||| |||||| ||||||||||| || ||| | Sbjct 836 TACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGCC 777 Query 155330 TTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTG 155389 | || |||||||||||||| ||||||||| || || || || | ||||| |||| Sbjct 776 TGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTG 717 Query 155390 TATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCT 155449 | ||| | | || ||| | |||||||| ||||||||||| |||||| | || || | Sbjct 716 TTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATAT 657 Query 155450 CTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCT 155509 |||||||||| |||| ||| | || ||||| || |||||||| ||||||||||| || | Sbjct 656 CTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATCCAT 597 Query 155510 TCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTT 155569 | |||||| | || ||||| ||||| ||||| || || || ||| ||||||||| |||| Sbjct 596 TTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 537 Query 155570 CATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTT 155629 | ||||| || ||| | ||| | ||||| ||||| | || ||| || |||| Sbjct 536 CCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGGGTT 477 Query 155630 ACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTC 155689 ||| ||||| ||||| |||||||||||||| || || ||||||||||| || || || | Sbjct 476 ACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCC 417 Query 155690 GTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTG 155749 | | |||||||| ||||| |||||||| || | | || |||||| | |||| Sbjct 416 GATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGGCTG 357 Query 155750 CATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACC 155809 | |||||||| || | |||||| |||||| | ||| | || ||||| ||||||| Sbjct 356 CTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 297 Query 155810 TTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACAT 155869 | || |||||||| |||||||| |||||||| ||| | ||| || ||| || | Sbjct 296 TAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACACTT 237 Query 155870 GGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTC 155929 |||| || || | || || ||| |||||||||||||||||||| || ||||| |||| Sbjct 236 GGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTC 177 Query 155930 ACAACTTCCCTCTTGACCTTGCTGCTG 155956 ||||||||||||| ||||| ||||||| Sbjct 176 ACAACTTCCCTCTAGACCTAGCTGCTG 150 >seq1 Length=68435666 Score = 136 bits (150), Expect = 5e-27 Identities = 193/266 (73%), Gaps = 9/266 (3%) Strand=Plus/Plus Query 155695 ATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTT-CACTTCTTCCTTGCTGCATG 155753 |||||| | ||| | |||||||| || | |||| || |||||| | |||| || Sbjct 3686479 ATCTTCTAATATACTAGTTTCAACAATTCTC-ATTTCTTACATTTCTTCTTGGCTGTTTG 3686537 Query 155754 GCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAA 155813 |||||| || | |||||| |||||| | || | || ||| | || ||||| || Sbjct 3686538 GCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTATGACTTTTAACCTAAA 3686597 Query 155814 CGGTTTCAACTTCAACCAGTCTGTAGTAGACGCT---AGTGGTAAAGTCATCCCTACATG 155870 | |||||| |||||||| |||||||| ||| | ||| || || ||| ||| || Sbjct 3686598 TGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGT---GTTATCAATACTTG 3686653 Query 155871 GGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCA 155930 | | || || | || ||||| ||||||||||||||||||||| || ||||| ||||| Sbjct 3686654 GACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGAACGTAATGCTCA 3686713 Query 155931 CAACTTCCCTCTTGACCTTGCTGCTG 155956 ||||||| |||| ||||| ||||||| Sbjct 3686714 CAACTTCTCTCTAGACCTAGCTGCTG 3686739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584542336463160