Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq40061 504 2e-138 seq1 111 5e-20 >seq40061 Length=156973 Score = 504 bits (558), Expect = 2e-138 Identities = 717/995 (72%), Gaps = 14/995 (1%) Strand=Plus/Plus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||| ||||| ||||||||| ||||||||||| ||||| || ||||||||||||||||| | Sbjct 150 CAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAA 209 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | | || | | |||||||||||| || || ||| | | ||| |||| Sbjct 210 GGTTAGCACGATTGATGATATCAGCCCAAGTGTTGATAACACGACCCTGACTGTCAACTA 269 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || |||||||| ||||| |||||||||||| ||||| | | | Sbjct 270 CAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAG 329 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATTG 40766 | | ||| || || | || || ||||| ||||||| ||| |||| | ||| |||| Sbjct 330 TGAACCAGATACCTACTACAGGCCAAGCAGCCAAGAA-GAAATGTAAGGAACGAGAATTG 388 Query 40767 TTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTA 40826 ||||| ||||||||| || || | || ||||| ||||| || ||||||||||| ||| Sbjct 389 TTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTA 448 Query 40827 TAAGTCTCGCCTTCCTGACCAAACTTATA-CCCGTAGTTCTGTGATTCAGTTTCCGTGGT 40885 ||||| || | || ||||| || | || |||| | || ||||| |||| ||||| Sbjct 449 TAAGTTTCTTCCTCTTGACCGAATCTGTAACCCGCA-TTAGCAGATTCGTTTTCAGTGGT 507 Query 40886 CTCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACC 40942 |||| || | | |||| || ||||| || ||||||||| || | | || Sbjct 508 TTCCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCC 564 Query 40943 ACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGC 41002 || || || || || || || | ||| || ||||| ||||| || ||||||||||| || Sbjct 565 GCCGAATACACCAGCTACACCCAACATGTGAAATGGATGCATAAGGATGTTGTGTTCCGC 624 Query 41003 TTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAA 41062 ||||| |||| |||||||||||| || ||| |||||||||||||||||||||||||| Sbjct 625 CTGGAATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAA 684 Query 41063 AGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGT 41122 | || ||||| | || || | ||||| ||||| ||| |||| | ||||||| Sbjct 685 ACTTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGA 744 Query 41123 GTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACC 41182 ||||| ||| ||||| || | |||||| || | | | ||||||||||| | ||| Sbjct 745 ATATGCAACAGCAATCCAAGGACGCATACCCAGGCGGAAACTAAGTTCCCACTCACGACC 804 Query 41183 AGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTT 41242 ||| ||||| || | ||| ||||| | ||||| || | ||| || ||||| || Sbjct 805 CATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATT 864 Query 41243 GTATAGCCACTCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTG 41301 ||||| |||||| || | | |||| |||||||| || || || ||||| | ||||| | Sbjct 865 GTATAACCACTCATCAACAGATGCC-GCTTCCCATATCGGATAAAAATGCAAACCGATAG 923 Query 41302 CGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGG 41361 | ||| |||||| | || ||||| ||||||||||| || || | || || || | Sbjct 924 CTGCAGAAGTCGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAG 983 Query 41362 AAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGA 41421 |||| || ||||| || ||||| |||||||| || || || || || |||||||| |||| Sbjct 984 AAACTGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATGA 1043 Query 41422 A-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTAT 41480 | ||| | || || || | ||| | || ||||| | ||||| ||||| || | ||| Sbjct 1044 ATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAA 1102 Query 41481 AGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 || ||||| || ||||| || | |||||| || || Sbjct 1103 AGACGGTTTTCAGTGCTGGTTATCCAGTTGCAGAA 1137 >seq1 Length=68435666 Score = 111 bits (122), Expect = 5e-20 Identities = 195/280 (70%), Gaps = 3/280 (1%) Strand=Plus/Minus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||| ||||| |||||||| ||||||||||| ||||| || ||||||||||||||||| | Sbjct 3686739 CAGCAGCTAGGTCTAGAGAGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAA 3686680 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 || | | || | | ||||| ||||||| || || || | | ||| |||| Sbjct 3686679 GATTAGCGCAATTGATGATATCAGTCCAAGTATTGATAACACAACTCTGACGGTCAACTA 3686620 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || ||| |||| |||||||||| ||||||| |||| | | | Sbjct 3686619 CAGATTGGTTGAA-TTGAAATCATTTAGGTTAAAAGTCATAGTACTAATACTTAAAGCAG 3686561 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATTG 40766 | | ||| || | | || || || || ||||| ||||| |||| | | |||| Sbjct 3686560 TGAACCAGATACTTACTACAGGCCAAACAGCCAAG-AAGAAATGTAAGAAATGAGAATTG 3686502 Query 40767 TTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAAC 40806 ||||| || ||||| || || | || ||||| |||| Sbjct 3686501 TTGAAACTAGTATATTAGAAGATCAATCGGCCAAAATAAC 3686462 Score = 102 bits (112), Expect = 2e-17 Identities = 218/319 (68%), Gaps = 5/319 (2%) Strand=Plus/Minus Query 40530 GAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGA 40589 || |||| ||||||||| ||||||||||| |||| || | ||||||||||||| | | | Sbjct 30150371 GATGCTATGTCTAGAGGGAAGTTGTGAGCATTACATTCATACATTACTTCCATATC-AAA 30150313 Query 40590 CTCTGTCTG-TTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 || || || | | ||||| | | | | ||| || | ||| | | |||||| Sbjct 30150312 CTTACCATGATTGATGATATCAGTCTAGATGGTAATAACATAACCCTGATTGTCTACATT 30150253 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATAC-CCATGGAGG 40707 | ||||| | || |||||||| |||||||||| ||||||| |||| | | ||| Sbjct 30150252 AGTTTGGTTGGAATTGAAACCATTTAGGTTAAAAGTCATAGTACTGATACGTAAAGCAGG 30150193 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTG-TAGCGCACGGCTATTG 40766 ||| | | || || | | | ||||| | | ||| || || || | || |||| Sbjct 30150192 TAA-CTAGATACCGACTGCAAGCCAAGCAGCCAAAAATAAATGTTAAGGAACAAGAATTG 30150134 Query 40767 TTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTA 40826 ||||| ||||||| | | || | ||| ||||| |||| || ||| |||| || ||| Sbjct 30150133 TTGAAACTAGCATATCGTGAGATAAATCTGCCAAATAAACCATGGGCACCTACAATATTA 30150074 Query 40827 TAAGTCTCGCCTTCCTGAC 40845 | ||| ||| || | |||| Sbjct 30150073 TGAGTTTCGTCTACTTGAC 30150055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143634037265574