Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq40061 585 3e-162 seq1 136 4e-27 seq4 86.0 7e-12 >seq40061 Length=156973 Score = 585 bits (648), Expect = 3e-162 Identities = 701/950 (74%), Gaps = 4/950 (0%) Strand=Plus/Plus Query 67357 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAA 67416 ||||||| ||||| ||||||||||||||||| ||||| || ||||| |||||||| |||| Sbjct 150 CAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAA 209 Query 67417 GTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC--GTCAAC 67474 | || | || | ||| || |||||||| || || ||| ||| |||||| Sbjct 210 GGTTAGCACGATTGATGATATCAGCCCAAGTGTTGATAACACGACC--CTGACTGTCAAC 267 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| |||||||| || |||||||| |||||||| | ||| | || Sbjct 268 TACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGC 327 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 |||||||||||| | || ||||| | ||||| | |||||| || | | || || Sbjct 328 AGTGAACCAGATACCTACTACAGGCCAAGCAGCCAAGAAGAAATGTAAGGAACGAGAATT 387 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| ||||| ||||||||||| || || || || ||||||||||| || || || Sbjct 388 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATT 447 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||| ||||| ||||| ||||| ||||||| || || || | ||||| || Sbjct 448 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCCGCATTAGCAGATTCGTTTTCAGTGGT 507 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | ||| || || | ||||| ||||||||||| || || || || || Sbjct 508 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCC 567 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| || ||||| ||||||||||||||||| || || || Sbjct 568 GAATACACCAGCTACACCCAACATGTGAAATGGATGCATAAGGATGTTGTGTTCCGCCTG 627 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | |||| |||| ||||||||||| || || | |||||| | ||||||||| Sbjct 628 GAATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 687 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||| | ||| |||| |||||| ||||| || || | || ||||| || || Sbjct 688 TCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATA 747 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACA 68014 ||| ||| ||||||||||||||||| || ||| || ||||||||||| |||||| Sbjct 748 TGCAACAGCAATCCAAGGACGCATACCCAGGCGGAAACTAAGTTCCCACTCACGACCCAT 807 Query 68015 GTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATA 68074 ||| | | || | | |||||| | || | || | |||| || ||||| || Sbjct 808 GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 867 Query 68075 CAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTT 68134 ||||||||||| | || ||| |||||||| || ||||| || || | |||||| || Sbjct 868 TAACCACTCATCAACAGATGCCGCTTCCCATATCGGATAAAAATGCAAACCGATAGCTGC 927 Query 68135 TGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAAC 68194 ||| | |||| || |||||||| || || ||||| || || | || ||||| | ||| Sbjct 928 AGAAGTCGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAAC 987 Query 68195 AGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCA 68254 ||||| | |||||||| ||||| |||||||| || |||||||| || || ||||| Sbjct 988 TGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATGAATAC 1047 Query 68255 AGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 || | ||| | | ||| ||| |||||||| ||||||||||| |||| Sbjct 1048 AGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAA 1097 >seq1 Length=68435666 Score = 136 bits (150), Expect = 4e-27 Identities = 203/281 (72%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 67357 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAA 67416 ||||||| ||||| |||| |||||||||||| ||||| || ||||| |||||||| |||| Sbjct 3686739 CAGCAGCTAGGTCTAGAGAGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAA 3686680 Query 67417 GTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCAC-CTG--CGTCAA 67473 | || | || | ||| || | ||||||| || || || || ||| ||||| Sbjct 3686679 GATTAGCGCAATTGATGATATCAGTCCAAGTATTGATAAC---ACAACTCTGACGGTCAA 3686623 Query 67474 CGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTG 67533 | || ||||||||||| |||||| | || ||||| || | |||||| | || | | Sbjct 3686622 CTACAGATTGGTTGAA-TTGAAATCATTTAGGTTAAAAGTCATAGTACTAATACTTAAAG 3686564 Query 67534 CAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTG-AAGACTTCTTGAG 67592 ||||||||||||| | || ||||| | |||| | |||||| || |||| | || Sbjct 3686563 CAGTGAACCAGATACTTACTACAGGCCAAACAGCCAAGAAGAAATGTAAGAAAT-GAGAA 3686505 Query 67593 TTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTA 67633 ||||||||| | ||| | ||||||||| || || || || Sbjct 3686504 TTGTTGAAACTAGTATATTAGAAGATCAATCGGCCAAAATA 3686464 >seq4 Length=57251647 Score = 86.0 bits (94), Expect = 7e-12 Identities = 99/130 (76%), Gaps = 5/130 (4%) Strand=Plus/Minus Query 67742 AGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTAC-TCCAAGCATAT 67800 |||| | |||||||||||||| || || || |||| |||| | ||| ||||| ||| | Sbjct 12483654 AGAAACATGCATAGCACTAAATAGGGAGTCATCGAAAACACTAGTTACATCCAA-CATGT 12483596 Query 67801 GGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTAC 67860 | ||| | | ||||||| ||||||| ||||| ||||| || || ||||| |||||| Sbjct 12483595 GAAATTGATTCATAAGGCTGTTGTGTTCTGCCTGGAATAC---AATCTAGTTGAAAGTAT 12483539 Query 67861 CAGAAATACC 67870 |||| || || Sbjct 12483538 CAGATATTCC 12483529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566663294102760