Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq12 105 1e-17 >seq12 Length=28800575 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || || ||||| | || | ||| || ||||||||||| | Sbjct 14035791 ACCACCACGAAGGCGGAGGACAAGATGAAGAGTGGACTCCTTCTGGATATTATAGTCCGC 14035732 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || | ||| || | || ||||| |||||||| | ||| || ||||||||||| Sbjct 14035731 CAAAGTACGCCCATCCTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCAGGAGG 14035672 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| |||||||| || |||| || | ||| || || || || ||| || Sbjct 14035671 AATACCTTCCTTATCTTGGATCTTGGCCTTGACATTATCGATGGTGTCCGAGCTCTCCAC 14035612 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||| || || || || || || || || ||||| || ||||| Sbjct 14035611 TTCTAGAGTGATGGTCTTCCCAGTGAGGGTCTTCACAAAGATCTGCAT 14035564 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || | ||||| || || ||||| ||||| || || ||||| ||| Sbjct 14035253 TGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGGATT 14035194 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | ||| ||| ||||| || |||||||||||| || || || || || Sbjct 14035193 TTTGCTTTAACATTGTCAATTGTATCAGAGCTCTCAACTTCTAGGGTGATGGTCTTTCCA 14035134 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || |||||||| ||||| Sbjct 14035133 GTAAGGGTCTTAACAAATATCTGCAT 14035108 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || ||||||||||| | ||||| |||||||| || || ||||| || || || || Sbjct 14046749 TGCTTCCCGGCAAAAATAAGCCTCTGCTGATCAGGGGGGATCCCTTCCTTGTCCTGGATC 14046690 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| ||| || || || ||| ||||| ||||| || || || || Sbjct 14046689 TTGGCCTTGACATTATCAATGGTGTCCGAGCTCTCCACTTCCAGAGTGATGGTCTTCCCA 14046630 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || ||||| Sbjct 14046629 GTCAGGGTCTTCACAAAAATCTGCAT 14046604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899203886813520