Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq12 107 4e-18 seq29159 95.1 2e-14 seq14 91.5 3e-13 seq10 86.0 1e-11 >seq12 Length=28800575 Score = 107 bits (118), Expect = 4e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || |||||||||| ||||| || |||| || | || || ||||||||||| | ||| Sbjct 14035289 ATGTTATAATCAGCCAATGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTC 14035230 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || || || ||||| || || ||||| ||||| ||| ||||| || | | Sbjct 14035229 TGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGGATTTTTGCTTTAACATTGTCAATTGTA 14035170 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || |||||||| || ||||| || ||||| | || |||| |||||||||| Sbjct 14035169 TCAGAGCTCTCAACTTCTAGGGTGATGGTCTTTCCAGTAAGGGTCTTAACAAATATCTGC 14035110 Query 192535 AT 192536 || Sbjct 14035109 AT 14035108 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || | || | ||| | ||| | ||| || ||||||||| || | Sbjct 14035791 ACCACCACGAAGGCGGAGGACAAGATGAAGAGTGGACTCCTTCTGGATATTATAGTCCGC 14035732 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| || | || || |||||||| || | ||| || |||||||| || Sbjct 14035731 CAAAGTACGCCCATCCTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCAGGAGG 14035672 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| |||||||| || || || |||||| || | || || || || Sbjct 14035671 AATACCTTCCTTATCTTGGATCTTGGCCTTGACATTATCGATGGTGTCCGAGCTCTCCAC 14035612 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||||| ||||| || ||||| | || || | ||| |||||||| Sbjct 14035611 TTCTAGAGTGATGGTCTTCCCAGTGAGGGTCTTCACAAAGATCTGCAT 14035564 Score = 104 bits (114), Expect = 5e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | ||| || | || ||||| | ||||| || ||| || || || || || Sbjct 14079142 ATCCCACCACGAAGGCGGAGGACCAAATGAAGAGTAGATTCCTTTTGA-ATGTTGTAGTC 14079084 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | || || || |||| ||||| ||||||||||||||||| | | ||| ||||| || Sbjct 14079083 TGCCAACGTGCGCCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGG 14079024 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || || || ||||| || || ||| |||||||| || | || || || Sbjct 14079023 TGGGATGCCCTCCTTATCCTGGATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTC 14078964 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || || || ||||| || ||||| | || || | ||| |||||||| Sbjct 14078963 TACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 14078913 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | ||| || | || ||||| | ||||| || ||| || || || || || Sbjct 14035565 ATCCCACCACGAAGGCGGAGGACCAAATGAAGAGTAGATTCCTTTTGA-ATGTTGTAGTC 14035507 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | | || || |||| |||| ||||||||||||||||| | | ||| ||||| || Sbjct 14035506 TGCCAGCGTGCGCCCATCCTCCAGCTGTTTACCAGCAAAGATAAGCCGCTGCTGATCTGG 14035447 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || || || ||||| || |||||| |||||||| || | || || || Sbjct 14035446 TGGGATGCCCTCCTTATCCTGGATTTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTC 14035387 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || || || ||||| || ||||| | || || | ||| |||||||| Sbjct 14035386 TACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 14035336 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || || || || || | || | || | |||||| ||| || || ||| Sbjct 14045284 ATGCCACCCCTGAGCCGCAAGACAAGGTGGAGTGTTGACTCTTTCTGGATGTTGTAGTCA 14045225 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | |||||| ||||||||||| | ||||| || ||||| Sbjct 14045224 GCCAAAGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGG 14045165 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || || || |||||| || | || || || Sbjct 14045164 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTATCAATGGTGTCCGAGCTCTCA 14045105 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||| || ||||| | || |||| ||| |||||||| Sbjct 14045104 ACTTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAAGATCTGCAT 14045055 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | ||| || | || ||||| | ||||| || ||| || || || || || Sbjct 14046605 ATCCCACCACGAAGGCGGAGGACCAAATGAAGAGTAGATTCCTTTTGA-ATGTTGTAGTC 14046547 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | | ||| || |||| |||| ||||||||||||||||| | | ||| ||||| || Sbjct 14046546 TGCCAGTGTGCGCCCATCCTCCAGCTGTTTACCAGCAAAGATGAGACGCTGCTGATCTGG 14046487 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || || || ||||| || || ||| |||||||| || | || || || Sbjct 14046486 TGGGATGCCCTCCTTATCCTGGATCTTAGCCTTTACATTGTCAATGGTGTCGGAGCTCTC 14046427 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || || || ||||| || || || | || || | ||| |||||||| Sbjct 14046426 TACCTCAAGGGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 14046376 Score = 86.0 bits (94), Expect = 1e-11 Identities = 258/379 (68%), Gaps = 42/379 (11%) Strand=Plus/Minus Query 24990 atataaattata-aatataattata--acaatcgaagtttatattctccattatttt--- 25043 ||||| |||||| ||||| |||||| | ||| || | |||| | |||||| || Sbjct 8096185 ATATATATTATACAATATTATTATATAATAATATAATATAATATATTACATTATATTAGA 8096126 Query 25044 -tatattttttcaaataaattac--tatataatt-tagt--tattt---ttatattaact 25094 |||||| | | ||||| || ||||| ||| |||| ||| | | |||||| | Sbjct 8096125 ATATATTAGTATATATAAAATATATTATATTATTATAGTATTATATAAATAATATTATAT 8096066 Query 25095 accagtatatatttaactatatttataaaaataatactgtgatgatatattataata-at 25153 | | ||||| | | |||| |||||| | ||||| | | || ||||||||| || Sbjct 8096065 ATAATAATATAATATAATATAATTATAATA-TAATATTAT-----TAGATTATAATATAT 8096012 Query 25154 taatat-taatggaaatattttatttttataaaataaaaataacaga-tataattgataa 25211 |||||| |||| | ||||| ||||||||||| || | ||||| | | |||| | || | Sbjct 8096011 TAATATATAATC-ATATATTATATTTTTATAATATTATAATAATATAATATATTATATTA 8095953 Query 25212 -atccatttaaaagaagat-atatta--atatattttatTAAAAGTAAATGATACCA--A 25265 | | ||| | | || || |||||| ||||| | |||||||| ||| ||| | | Sbjct 8095952 TAACTATTGATTATAATATTATATTATAATATACTATATTAAAATATAAT-ATAGTATTA 8095894 Query 25266 CACCATATTATACAAGATAATTGCGTTAATTACAATTTATTTTTATTAACAGATATAATG 25325 | |||| |||| | |||| | |||| || |||| ||||| | |||| || Sbjct 8095893 TATCATAATATATTATATAAAT------ATTATTATATATTATTATTTTAATATATTAT- 8095841 Query 25326 TCGAATATAATATTATGAT 25344 |||||||||||||||| Sbjct 8095840 ---AATATAATATTATGAT 8095825 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || ||||| || | || | || | || | |||||| ||| ||||| ||| Sbjct 14035109 ATACCGCCCCTAAGCCGCAGGACAAGGTGGAGTGTTGACTCTTTCTGGATGTTATAGTCA 14035050 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | ||||| ||||||||||| | ||||| || || || Sbjct 14035049 GCCAAAGTGCGGCCATCCTCAAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGC 14034990 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || ||| || |||||| || | || || || Sbjct 14034989 GGAATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTATCAATTGTGTCAGAGCTCTCA 14034930 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||| || ||||| | || || | ||| |||||||| Sbjct 14034929 ACTTCCAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 14034880 >seq29159 Length=2312 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || || || || || | || | || | |||||| ||| || || ||| Sbjct 1991 ATGCCACCCCTGAGCCGCAAGACAAGGTGGAGTGTTGACTCTTTCTGGATGTTGTAGTCA 1932 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | |||||| ||||||||||| | ||||| || ||||| Sbjct 1931 GCCAAAGTGCGGCCATCCTCAAGTTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGA 1872 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || || || |||||| || | || || || Sbjct 1871 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTATCAATGGTGTCCGAGCTCTCA 1812 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||| || ||||| | || |||| ||| |||||||| Sbjct 1811 ACTTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAAGATCTGCAT 1762 >seq14 Length=24379743 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| ||||| || | || || || |||| ||||| || || ||||||||||| | | Sbjct 11038942 GATGTTATAGTCTGCCAAGGTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAGGCG 11038883 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||||||||| || || ||||| || || || ||| ||| |||||| || | Sbjct 11038882 CTGCTGATCAGGTGGGATCCCCTCTTTGTCCTGAATCTTAGCTTTCACATTATCAATGGT 11038823 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| || || || || || || || || ||||| | || || | ||| ||||| Sbjct 11038822 GTCTGAGCTCTCAACCTCAAGGGTGATTGTCTTGCCAGTAAGGGTCTTCACAAAGATCTG 11038763 Query 192534 CAT 192536 ||| Sbjct 11038762 CAT 11038760 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | || | || || || | ||| | |||||| ||| || ||||| Sbjct 11039217 ATTCCACCTCTTAATCGGAGGACCAAGTGAAGAGTGGACTCTTTTTGGATGTTGTAATCT 11039158 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | |||||| || |||| || | || || |||||||| || | | ||| ||||||||| Sbjct 11039157 GCTAATGTGCGACCATCCTCAAGCTGCTTCCCAGCAAATATCAGGCGCTGCTGATCAGGT 11039098 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || || ||| |||||| || | ||||| || Sbjct 11039097 GGGATGCCCTCCTTATCCTGAATCTTTGCTTTCACATTATCAATGGTGTCTGAGCTCTCA 11039038 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || || || | || || || || |||||||| Sbjct 11039037 ACCTCAAGGGTGATAGTCTTCCCTGTAAGGGTCTTGATGAAGATCTGCAT 11038988 >seq10 Length=31890735 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | || || | || || || | ||||| ||| || ||| |||||||| | Sbjct 15231362 CCACCACGGAGGCGGAGCACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCCGCC 15231421 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| |||| ||| || ||||||||||| || | ||| || || || || Sbjct 15231422 AGGGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCCGGAGGA 15231481 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || |||||| || || || || | || || || || Sbjct 15231482 ATGCCTTCCTTGTCCTGAATTTTAGCCTTCACGTTGTCAATCGTGTCCGAGCTCTCGACC 15231541 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| ||||| || ||||| | || || | ||| |||||||| Sbjct 15231542 TCAAGAGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 15231588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983974684567350