Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq12 96.9 6e-15 >seq12 Length=28800575 Score = 96.9 bits (106), Expect = 6e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | ||| | ||| | ||| || |||||||| || | Sbjct 14035791 ACCACCACGAAGGCGGAGGACAAGATGAAGAGTGGACTCCTTCTGGATATTATAGTCCGC 14035732 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || | || || | || || ||||||||||| | ||| || || ||||| || Sbjct 14035731 CAAAGTACGCCCATCCTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCAGGAGG 14035672 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| |||||||| || || || |||||| || || || || || || Sbjct 14035671 AATACCTTCCTTATCTTGGATCTTGGCCTTGACATTATCGATGGTGTCCGAGCTCTCCAC 14035612 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||||| ||||| || ||||| | || || | || |||||||| Sbjct 14035611 TTCTAGAGTGATGGTCTTCCCAGTGAGGGTCTTCACAAAGATCTGCAT 14035564 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| |||||||| | || | || | || || | || || |||||||| || | || Sbjct 14035290 AATGTTATAATCAGCCAATGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCT 14035231 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| || || ||||| || || ||||| ||||| ||| ||||| || || Sbjct 14035230 CTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGGATTTTTGCTTTAACATTGTCAATTGT 14035171 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || || |||||||| || ||||| || ||||| | || |||| |||||||| Sbjct 14035170 ATCAGAGCTCTCAACTTCTAGGGTGATGGTCTTTCCAGTAAGGGTCTTAACAAATATCTG 14035111 Query 172067 CAT 172069 ||| Sbjct 14035110 CAT 14035108 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || || |||| || | || | || | |||||| ||||| || || Sbjct 14045512 ATGCCACCCCTGAGCCGTAGAACAAGGTGGAGTGTTGACTCTTTCTGGATATTGTAGTCA 14045453 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| ||| | || || | |||||| ||||||||||| | ||||| |||||||| Sbjct 14045452 GCCAAAGTTCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATGAGCCTCTGCTGGTCAGGG 14045393 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || ||| || |||||| || || || || || Sbjct 14045392 GGGATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTATCAATTGTGTCAGAGCTCTCA 14045333 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || ||||| || ||||| | || || | || |||||||| Sbjct 14045332 ACTTCCAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 14045283 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || ||||| | ||||| || || ||| || || ||| Sbjct 14079142 ATCCCACCACGAAGGCGGAGGACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCT 14079083 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || ||||| |||||||||||||| || | | ||| || || ||| Sbjct 14079082 GCCAACGTGCGCCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGGT 14079023 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || || ||| |||||||| || || || || ||| Sbjct 14079022 GGGATGCCCTCCTTATCCTGGATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCT 14078963 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| | || || | || |||||||| Sbjct 14078962 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 14078913 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || ||||| | || | ||| | || | |||||| ||| || || || Sbjct 14032925 ATGCCACCCCTGAGTCGGAGAACAAGATGGAGTGTCGACTCTTTCTGAATGTTGTAGTCA 14032866 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | ||||| || || ||||| | ||||||||||| || Sbjct 14032865 GCCAGTGTGCGACCATCCTCAAGCTGTTTGCCGGCGAAAATAAGCCTCTGTTGGTCTGGG 14032806 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || || |||||| || ||||| || ||| Sbjct 14032805 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTATCGATTGTATCAGAGCTTTCA 14032746 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| ||||| || ||||| | || |||| || |||||||| Sbjct 14032745 ACTTCAAGAGTGATGGTCTTGCCAGTCAGAGTCTTAACAAAGATCTGCAT 14032696 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || ||||| | ||||| || || ||| || || ||| Sbjct 14035565 ATCCCACCACGAAGGCGGAGGACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCT 14035506 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || |||| |||||||||||||| || | | ||| || || ||| Sbjct 14035505 GCCAGCGTGCGCCCATCCTCCAGCTGTTTACCAGCAAAGATAAGCCGCTGCTGATCTGGT 14035446 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || |||||| |||||||| || || || || ||| Sbjct 14035445 GGGATGCCCTCCTTATCCTGGATTTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCT 14035386 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| | || || | || |||||||| Sbjct 14035385 ACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 14035336 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| || || | |||| || | || || | |||||| ||||||||||| | ||| Sbjct 14045920 ATATTGTAGTCAGCCAAAGTGCGACCATCCTCAAGTTGTTTGCCAGCAAAAATGAGCCTC 14045861 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || |||||||| || || || || ||||| || || || || |||||| || || Sbjct 14045860 TGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTATCAATGGTG 14045801 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || ||||| || ||||| || || ||||| | || |||| || |||||| Sbjct 14045800 TCCGAGCTCTCAACTTCCAGGGTAATAGTCTTGCCAGTGAGAGTCTTAACAAAGATCTGC 14045741 Query 172068 AT 172069 || Sbjct 14045740 AT 14045739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904682741833800