Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq12 150 5e-31 seq16 145 2e-29 seq15 131 5e-25 seq14 111 5e-19 seq4 109 2e-18 seq5 91.5 4e-13 >seq12 Length=28800575 Score = 150 bits (166), Expect = 5e-31 Identities = 240/341 (70%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| | ||||||||| |||||| ||| | | || || Sbjct 18985803 ATTTCTAACAGTACCATCATATTTGACCATAATGTCCTCCATAGCCTTCACAAGGCGCCG 18985744 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||||||| || || ||| ||||| ||||| ||||| |||| ||| | | |||||| Sbjct 18985743 CTGAATATATCCCGTCTCAGAAGTTTTCACAGCAGTATCGATTAAACCTTCCCTACCACC 18985684 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||||||||| | || | ||| || ||| | || ||||| |||| || || Sbjct 18985683 CATAGCATGGAAGAAGAATTCCTGTGGTGTTAACCCACGAAGGTAGGAGTTCTCCACAAA 18985624 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775 |||||| || ||| || ||| || || ||||| || | || | | || | | Sbjct 18985623 ACCACGACTTTCAGGCCCATAGTCATCTTTTGTGAAGTGAGGTAATGTTC-GATCAATGA 18985565 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | || || || || || || || ||||| ||||||||||||| || | | ||||||| Sbjct 18985564 -ACCCATAAGGAATCCGTTTGCCCTCAACATTCTGCTGTCCCACACAAGCAGTCATCTGA 18985506 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||||| || | | ||| ||||| || || ||| | ||||| Sbjct 18985505 GAAATGTTAATAAAACTACCCTTTGATCCTGCAGTAACCAT 18985465 Score = 93.3 bits (102), Expect = 1e-13 Identities = 104/137 (76%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 301830 GGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAG 301889 |||||||||| | || || || ||| || |||||||||| |||||||||||||||| Sbjct 18986529 GGGAACACCAAGAGTAACATTCT--TTGCACT-AACACCAGCATAGTGGAAAGTATTCAG 18986473 Query 301890 AGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCC 301949 || | ||||| | ||| |||||||| ||| || || || ||||| ||| || || Sbjct 18986472 GGTCATCTGAGTTGCTGGTTCACCAATGGATTGGGCAGCTATGCAACCAATCATCTCACC 18986413 Query 301950 TGGTGCTACAATAGACT 301966 ||||||||||| |||| Sbjct 18986412 TGGTGCTACAAGTGACT 18986396 >seq16 Length=21371083 Score = 145 bits (160), Expect = 2e-29 Identities = 239/341 (70%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| | |||||||||||||||| ||| | | || || Sbjct 20657600 ATTTCTAACAGTACCATCATATTTGACCATAATGTCTTCCATAGCCTTCACAAGGCGCCG 20657541 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||||||| ||||| ||| ||||| ||||| |||||||||| || | | |||||| Sbjct 20657540 CTGAATATACCCAGTCTCAGAAGTTTTCACAGCAGTATCAATTAATCCTTCCCTACCACC 20657481 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||||||||| | || | ||| || ||| | || | ||| |||| || || Sbjct 20657480 CATAGCATGGAAGAAGAATTCCTGTGGTGTTAACCCACGAAGGTAAGAGTTCTCCACAAA 20657421 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775 |||||| || ||| || ||| || || ||||| || | || | | || | | Sbjct 20657420 ACCACGACTTTCAGGCCCATAGTCATCTTTTGTGAAGTGAGGTAATGTTC-GATCAATGA 20657362 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | || || || || || || || ||||| ||||||||||||| || | | ||||||| Sbjct 20657361 -ACCCATAAGGAATCCGTTTGCCCTCAACATTCTGCTGTCCCACACAAGCAGTCATCTGA 20657303 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||||| || | ||| || || || || || ||||||| Sbjct 20657302 GAAATGTTAATGAAACTACCTTTTGATCCCGCCGTTACCAT 20657262 Score = 132 bits (146), Expect = 1e-25 Identities = 321/475 (68%), Gaps = 16/475 (3%) Strand=Plus/Minus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTT-AA 288940 |||| || || || | |||||| ||||| | ||| | |||| | | ||| ||| || Sbjct 17436896 TCTAGAATGTCTGCACGGTTTGTGGCTGCAATTACTATAATACCAGTA--TTTCCTTCAA 17436839 Query 288941 ATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTC 289000 | |||||||| ||| |||| |||||||| |||||||| |||||||||||| |||| Sbjct 17436838 AACCATCCATCTCTGTCAAAAGCTGATTAAGAGTTTGTTCTCTTTCATCATTT---CCTC 17436782 Query 289001 TTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCA 289060 | | ||| | | || |||| | ||||||||||||||||| |||| || | | Sbjct 17436781 CTCCAATACCTG--TTCCT-CTTTGCCTTCCAACAGCATCAATTTCATCAACAAACACAA 17436725 Query 289061 CACACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 || |||| ||| | | | || ||| ||| | || | || || || || |||| Sbjct 17436724 TGCATGGAGCATTCTCTTTGGCCTTCTTGAAAAGA--TCACGAACTCGCGAAGCACCAAC 17436667 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTT 289177 |||||| |||| |||||||| ||||| | || | |||| | |||| ||| ||||| Sbjct 17436666 TCCAACAAACATCTCTACAAACTCAGACCCTGA-AATTGAGAAAAATGGAACACCTGCTT 17436608 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | ||||| | |||| | || || | ||||| || ||||| || || || | | |||| Sbjct 17436607 CTCCTGCAATTGCCTTAGCAAGCAAAGTCTTCCCAGTTCCCGGAGGACCAACAAGAAGAA 17436548 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 | || || || | || || | | || || | ||||| |||| ||||| || | Sbjct 17436547 CACCTTTAGGAATACGAGCACCTACTGCAGTAAATCTTTCAGGTTTCTTCAAAAACTCCA 17436488 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | | ||| || || | ||| || ||||| ||| || |||||| | || || Sbjct 17436487 CCACCTCCATAAAATCCTGTTTGGCTTCATCTACTCCAGCAACATCATCGAATGT 17436433 Score = 84.2 bits (92), Expect = 6e-11 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 301830 GGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAG 301889 |||||||||| | || || || ||| || || |||||||| ||||||||||||| || Sbjct 20658326 GGGAACACCAAGAGTAACATTCT--TTGCACTCA-CACCAGCATAGTGGAAAGTATTTAG 20658270 Query 301890 AGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCC 301949 || | ||||| | ||| |||||||| ||| || || | ||||| |||||| || Sbjct 20658269 GGTCATCTGAGTTGCTGGTTCACCAATGGATTGGGCAGCTACACAACCAATCATTTCACC 20658210 Query 301950 TGGTGCTACAATAGACT 301966 ||||||||| | |||| Sbjct 20658209 TGGTGCTACCAGTGACT 20658193 >seq15 Length=24314465 Score = 131 bits (144), Expect = 5e-25 Identities = 282/420 (67%), Gaps = 14/420 (3%) Strand=Plus/Minus Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || | | ||| || | ||||||||| |||||||||||| ||| Sbjct 15395062 AAACCATCCATTTCAGTAAGCAGTTGGTTCAATGTTTGTTCTCTTTCATCATTT---CCT 15395006 Query 289000 CTTGAATCACCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAA 289055 | | || | || | |||| ||| | || || |||||||| ||||||||||| Sbjct 15395005 CCT-------CCAATTCCAGTTCCTCTTTGCCTTCCTACTGCATCAATCTCGTCAATGAA 15394953 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 | || ||| ||||||||| | | || | ||| || || || || | || || || Sbjct 15394952 GACCAGACATGGAGAATTTGCTGTTGCCTTATTAAACAAATCCCTAACTCTCGAAGCCCC 15394893 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGC 289175 | ||| ||| |||| || | || |||||| | || | | ||| | || ||| Sbjct 15394892 TACACCGACAAACATCTCAATGAACTCAGAACCTGACAAGGAGAAGAAAGGAACCCCTGC 15394833 Query 289176 TTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235 || ||||||| || | ||||| | |||||| || ||||||||||| || ||| || Sbjct 15394832 CTCCCCTGCTATGGCTTTAGCCAGCAATGTCTTCCCAGTTCCAGGTGGCCCAACTAGAAG 15394773 Query 289236 AACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTC 289295 ||| |||||||| | |||| || ||| | ||||||| ||| ||| || || || Sbjct 15394772 AACACCCTTTGGGATCCTTGCTCCCACAGCAGCAAATTTCTCTGGGGACTTCAAGAACTC 15394713 Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAAT 289355 ||||| |||| | || | | ||| |||||| || ||||| || |||| || || Sbjct 15394712 AACAATCTCCTTGAAGTCTTGCTCTGCTTCATCAACACCGGCTACGTCGTCAAATGTGAT 15394653 >seq14 Length=24379743 Score = 111 bits (122), Expect = 5e-19 Identities = 258/383 (67%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 288963 TTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCt 289022 |||||| ||||| ||| | |||||||| ||||| | ||| | || | || || Sbjct 1918483 TTGATTTAGTGTGCTTTCACGCTCATCATTGGAACC-CGAGAAGCCTCC--ACGGCCTCT 1918539 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 | | ||||| ||||||||||| ||||| ||||| | | || | | |||| || Sbjct 1918540 TGCTCGACCAATTGCATCAATTTCATCAATAAAAATTATGCTAGGTGCACACTGTCGGGC 1918599 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 |||||| || | || || | ||| | ||||| ||||||| ||||||| | ||| || Sbjct 1918600 TTCTGCAAACAAGTTCCTCACTCTGGAAGGTCCAACACCAACAAACATTTCCATAAAATC 1918659 Query 289143 AGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 ||| | | | | || | ||| | |||| | ||| || ||| ||| | || |||| Sbjct 1918660 TGAACCAG-CAATAGACAAGAAAGGTACACCAGATTCCCCAGCTGTTGCTTTTGCAAGAA 1918718 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAG 289261 |||| || ||||| ||||| || || | | || | || || || | ||| || || Sbjct 1918719 GTGTTTTCCCTGTACCAGGAGGGCCTACAAGAAGGGCACCTTTGGGAATTTTCGCTCCTA 1918778 Query 289262 CAGACTTATATTTCTCAGG-GCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 || |||||||| || | ||||| || | |||| |||| || ||| | ||| Sbjct 1918779 GTTCCTCATATTTCTTTGGATTTTTTTAAGAAGTGCACAAATTCCATAATTTCTTGTTTG 1918838 Query 289321 GCCTCATCACATCCTGCTACATC 289343 ||||||||||| || |||||||| Sbjct 1918839 GCCTCATCACAGCCAGCTACATC 1918861 >seq4 Length=57251647 Score = 109 bits (120), Expect = 2e-18 Identities = 317/475 (67%), Gaps = 16/475 (3%) Strand=Plus/Minus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT--TTGCTT-A 288939 |||| ||||| || | || || ||||| | ||||| || | | || || ||| | Sbjct 44157248 TCTAGGATATCTGCACGATTGGTGGCTGCAATTACAATTAT---TCCAGTATTTCCTTCA 44157192 Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || || | |||||||| |||||||| || |||||||| |||| Sbjct 44157191 AACCCATCCATCTCAGTCAACAGCTGATTAAGAGTTTGTTCTCTCTCATCATTCCCACCT 44157132 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 | ||| || || ||| || || |||||||||||||| || || | ||||| Sbjct 44157131 CC--AATT--CCTGTTC-CTCTTTGCCTT-CCAACAGCATCAATCTCATCCACAAAAATG 44157078 Query 289060 ACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 | || || | ||| | | | || | ||| | || | || || || || || | | Sbjct 44157077 ATGCAAGGCGCATTCTCTTTGGCCTTCTTAAAAAGATCACGGACTCGTGAAGCACCTACA 44157018 Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTC 289178 |||||| |||| |||||||| ||||| | || | |||| | |||| ||| |||||| Sbjct 44157017 CCAACAAACATCTCTACAAACTCAGAGCCAGA-AATTGAGAAAAATGGAACACCTGCTTC 44156959 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 || || | |||| | || || | ||| || || ||||| || || || | ||||| Sbjct 44156958 ACCAGCAATTGCCTTGGCAAGCAATGTTTTCCCAGTTCCTGGAGGACCAATAAGAAGAAC 44156899 Query 289239 TCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTAC 289298 |||||||| | ||| || | | || | |||| || |||| || || || || Sbjct 44156898 ACCCTTTGGAATCCGTGCACCTACTGCAGTAAACCTCTCTGGTTTCTTCAAGAACTCCAC 44156839 Query 289299 AATTTCC-TCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | |||| | ||| || | ||||| ||||| ||| || |||||| |||| || Sbjct 44156838 CACTTCCATGAAG-TCCTGCTTTGCTTCATCTACTCCAGCAACATCATCAAATGT 44156785 >seq5 Length=51955539 Score = 91.5 bits (100), Expect = 4e-13 Identities = 254/382 (66%), Gaps = 7/382 (2%) Strand=Plus/Minus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023 ||||| ||||| ||| | |||||||| | |||| ||||| ||| | || ||| Sbjct 1026525 TGATTTAGTGTACTTTCGCGCTCATCATTGGCACCTGA-GAATCCCCC--ACGGCCTCTT 1026469 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 ||||| |||||||| || ||||| ||||| | | || | | |||| || Sbjct 1026468 GCCCGACCAATTGCATCAATCTCATCAATAAAAATTATGCTAGGTGCACACTGTCGGGCT 1026409 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 |||| || | || || | ||| | ||||| ||| ||| ||||||| | ||| || Sbjct 1026408 TCCACAAACAAGTTCCTCACCCTGGAAGGTCCAACACCGACAAACATTTCCATAAAATCT 1026349 Query 289144 GAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 ||| | | | | || | ||| | |||| | || ||||| ||| | || ||||| Sbjct 1026348 GAACCAGCAA-TAGACAAGAAAGGTACACCAGACTCTCCTGCAGTTGCTTTTGCAAGAAG 1026290 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAG 289261 ||| || || || ||||| || || | | ||| | || || || | ||| || ||||| Sbjct 1026289 TGTTTTTCCCGTGCCAGGAGGGCCTACAAGAAGAGCACCTTTGGGAATTTTCGCTCCCAG 1026230 Query 289262 CAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTG 289321 || ||| |||| || | ||||| || | |||| |||| || ||| | ||| | Sbjct 1026229 TTC-CTCATACTTCTTGGGATTTTTTAAGAAGTGCACAAATTCCATAATTTCTTGTTTGG 1026171 Query 289322 CCTCATCACATCCTGCTACATC 289343 |||||||||| || |||||||| Sbjct 1026170 CCTCATCACAGCCAGCTACATC 1026149 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||||||||| || | |||||||| ||||| | ||| ||||||| ||| ||||||||| Sbjct 50579251 TTGCAAATAGATCCCGAACACGGGAGGCTCCCATACCCACATACAATTCGACAAATTCAC 50579192 Query 289145 AAGCGGAT--ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 || || |||| || || | || | |||||| || ||||| || | || | ||| Sbjct 50579191 TTGCAGAACAACTT--ATAAAGGGAACTTCTGCTTCTCCAGCTACAGCTTTTGCTAAAAG 50579134 Query 289203 TGTCTTACCTGTTCCAGG 289220 |||||||||||||||||| Sbjct 50579133 TGTCTTACCTGTTCCAGG 50579116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471062143162557