Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq40061 636 2e-177 seq14 174 2e-38 seq1 158 1e-33 seq357 89.7 6e-13 seq7 87.8 2e-12 seq4 86.0 7e-12 >seq40061 Length=156973 Score = 636 bits (704), Expect = 2e-177 Identities = 738/990 (75%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639 |||||| | ||| |||| || | ||||| || || | || |||||||| || || Sbjct 1137 TTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1078 Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157698 ||||| || || | ||| | ||||| ||||| ||||| |||||||| | |||||||| Sbjct 1077 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTCATTATCGCCTTCATTGCTGCTCC 1019 Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 157758 || || || || || || || |||||||| || ||||||| || | ||||| ||||| Sbjct 1018 TCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAA 959 Query 157759 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 157818 || ||||||||||| || | || |||| || || ||| | || || ||||| || Sbjct 958 TATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGAT 899 Query 157819 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 157878 |||||||| ||||| ||||||||||| | || || || ||||||| | || | || Sbjct 898 ATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 839 Query 157879 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 157938 | |||||| | ||||| | | |||||||| ||||||||||||||| | ||| Sbjct 838 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 779 Query 157939 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 157998 | |||||||| || ||||| ||| |||||||| ||||| || || || || |||| Sbjct 778 CCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 719 Query 157999 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158058 ||| ||| | |||| ||| | |||||||| |||||| |||| ||||||| | || || Sbjct 718 TGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 659 Query 158059 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158118 ||||||||||| |||| |||| |||||||||| || |||||||||||||||||||| || Sbjct 658 ATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATCC 599 Query 158119 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 158178 || || ||| | ||||| ||||| |||||||| || || || ||| ||||||||| || Sbjct 598 ATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 539 Query 158179 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACG 158237 | || || | || | | || | ||||| ||||||| || || || | Sbjct 538 TTCCTTGGTAACCT-CTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGG 480 Query 158238 GTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 158297 |||||| ||||||||||||||||| || ||||| ||||| || || ||||| || || | Sbjct 479 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 420 Query 158298 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158357 | || |||||||||||||| ||| |||||||| || |||||||| || |||||| | | Sbjct 419 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGG 360 Query 158358 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 158417 |||| |||||||| || || ||||||||||| || | || | || ||||| |||| Sbjct 359 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 300 Query 158418 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 158477 |||| || |||||||| |||||||| || | |||| ||||||||||||| | |||| Sbjct 299 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACA 240 Query 158478 CCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158537 | ||||| ||| | | || || ||| |||||||||||||| |||||||| ||||| | Sbjct 239 CTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATG 180 Query 158538 CACACAACTTCCCACTCGACCTTGCTGCTG 158567 | ||||||||||| || ||||| ||||||| Sbjct 179 CTCACAACTTCCCTCTAGACCTAGCTGCTG 150 Score = 545 bits (604), Expect = 3e-150 Identities = 718/990 (73%), Gaps = 4/990 (0%) Strand=Plus/Plus Query 159324 GATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTGGCC 159383 || || || |||||||| || |||||||| ||| | || |||| ||||||| | || Sbjct 33106 GACCGTTTCGTTTTTGTAGGCTGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 33165 Query 159384 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCT 159443 | || |||||| |||| || ||| ||||||| || ||||| ||||| || | || Sbjct 33166 TTAGGAGGTTGGTTTACAGGTACAACTTTTGTAACTTCATGGTATACCCATGGATTGGCC 33225 Query 159444 AGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGACGCT 159503 ||||||||| | || ||| || || | || || || || || || ||||| | | Sbjct 33226 AGTTCCTATTTGGAAGGTTGCAATTTCTTGACCGCTGCAGTTTCCACTCCTGCGAATAGT 33285 Query 159504 ATGGGTCATTCTCTTCTT-CTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTG 159562 | | ||||| ||| || ||||| ||||| |||||| | || ||| |||| || || Sbjct 33286 TTAGCACATTC-CTTGTTGCTACTATGGGGCCCTGAGGCACAAGGGGATTTTACTCGTTG 33344 Query 159563 GTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATTGG 159622 ||| ||| | || || | |||| |||||| || ||||| |||| |||| ||||| || Sbjct 33345 GTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGTTTTCGGACTAATAGG 33404 Query 159623 TTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGTATC-CGTCCTTACAATGCTA 159681 ||| ||| | ||||| || ||||| || || || || || || ||||| ||||| | Sbjct 33405 TTTTATGTTACGTCAATTCGAACTTGCTCGA-TCTGTGCAATTGCGACCTTATAATGCAA 33463 Query 159682 TTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCATTGGGTC 159741 | || ||||||| ||| |||||||||||||| || ||||| || || ||| |||||| Sbjct 33464 TCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGGTC 33523 Query 159742 AGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGT 159801 | || ||||||| || || || ||||| || ||||| || ||| ||||| | | | Sbjct 33524 AATCTGGTTGGTTCTTTGCGCCCAGTTTTGGCGTAGCAGCTATATTTCGATTCATCCTCT 33583 Query 159802 TCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTA 159861 || | ||||| ||||| || |||||||| || || || ||||||||||||||||| || Sbjct 33584 TCTTCCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAG 33643 Query 159862 TACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATG 159921 || |||| | || || || | || || ||||| | ||| ||||| || || | | | Sbjct 33644 TATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCG 33703 Query 159922 AAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTT 159981 ||||||| || |||||||| || || ||| | ||||||||| || ||||||| Sbjct 33704 AAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTT 33763 Query 159982 ACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACA 160041 | || ||||||||||| |||||||| ||||| || ||||| || |||| ||||| || | Sbjct 33764 ATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATA 33823 Query 160042 AGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTA 160101 | || ||| | |||||||| ||| | ||||| || || | ||| | |||| || Sbjct 33824 AACGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTC 33883 Query 160102 TTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCA 160161 |||| | | ||||| ||||| || || ||||| || || ||||| ||||| ||| Sbjct 33884 TTGGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCGTTTCCCAAGAAATCC 33943 Query 160162 GAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAG 160221 | ||||| |||||||| ||||||||||| |||||||||||||| ||||| || ||||||| Sbjct 33944 GTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTCTTAAACGAAG 34003 Query 160222 GACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAG 160281 | | ||||| ||| |||| || ||||| || ||||||||| |||| ||||| || | Sbjct 34004 GTATTCGTGCTTGGATGGCGGCTCAGGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 34063 Query 160282 AAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 | || | || | || ||||| ||||||| Sbjct 34064 AGGTTCTACCCCGTGGAAACGCTCTTTAAT 34093 >seq14 Length=24379743 Score = 174 bits (192), Expect = 2e-38 Identities = 245/344 (71%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 159678 GCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCATTG 159737 || ||||| ||||||| ||| |||||||||||||| | ||||| || || |||||| Sbjct 16929123 GCAATTGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTATATTCCTGATTTATCCATTG 16929182 Query 159738 GGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTG 159797 |||| || ||||||| || || || ||||| || ||| | || ||| |||| | Sbjct 16929183 GGTCGATCTGGTTGGTTCTTTGCGCCCAATTTTGGTGTAGCAACTATATTTCTATTCATC 16929242 Query 159798 TTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCT 159857 | || | ||| | ||| | || |||||||| || || || |||||||||||||||||| Sbjct 16929243 CTTTTTTTCCAAAGGTTTTATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCT 16929302 Query 159858 GGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTG 159917 || || |||| | || || || | || || ||||| | ||| ||||| || | | Sbjct 16929303 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATATTTTA 16929362 Query 159918 TATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAG 159977 | |||||||| || |||||||| || | || ||| | ||||||||| || ||| Sbjct 16929363 TTCGAAGATGGTGACGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAG 16929422 Query 159978 ACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 160021 ||||| ||||||||| | || ||| ||||| || ||||| Sbjct 16929423 ACTTATGTAATGGTCACTACTCACTACTTTTGGTCCCAAATCTT 16929466 >seq1 Length=68435666 Score = 158 bits (174), Expect = 1e-33 Identities = 202/277 (73%), Gaps = 1/277 (0%) Strand=Plus/Plus Query 158291 TACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTC 158350 || || || || ||||||||| |||| || |||||||| || | || ||| || ||| Sbjct 3686464 TATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATTTC 3686523 Query 158351 TTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATG 158410 ||| | |||| |||||||| || | ||||||||||| || | | | || ||| Sbjct 3686524 TTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTATG 3686583 Query 158411 GCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTG 158470 | || ||||| || | |||||| |||||||| || | |||| ||||| || |||| Sbjct 3686584 ACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTGTT 3686642 Query 158471 TTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAG 158530 | || || ||| | ||| | | || ||||| ||||||||||||||| |||||||| Sbjct 3686643 ATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGAA 3686702 Query 158531 CGTAACGCACACAACTTCCCACTCGACCTTGCTGCTG 158567 ||||| || ||||||||| | || ||||| ||||||| Sbjct 3686703 CGTAATGCTCACAACTTCTCTCTAGACCTAGCTGCTG 3686739 Score = 102 bits (112), Expect = 9e-17 Identities = 237/354 (67%), Gaps = 5/354 (1%) Strand=Plus/Plus Query 158207 GAAACGACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACC 158266 ||||| ||| ||| ||||| || | ||||||| ||| |||||| || || || Sbjct 30150012 GAAACCACTAAAAATGAGTCTACTAATGAAGGTTACAGATTCAGTCAAGTAGACGAAACT 30150071 Query 158267 TATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 158326 |||| || || | || ||||| | || || | || |||| | ||| ||| ||| Sbjct 30150072 CATAATATTGTAGGTGCCCATGGTTTATTTGGCAGATTTATCTCACGATATGCTAGTTTC 30150131 Query 158327 AACAACTCCCGTTCCTTG-CACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 158385 ||||| || ||||||| || || || | ||||| |||| || ||||| |||| ||| Sbjct 30150132 AACAATTCTTGTTCCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTCGGTATCTAGTT 30150191 Query 158386 CACCGCCCTTGGCGTCTCC--ACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 158443 | || || ||| || || ||| | || ||||| || |||||||| | |||||| Sbjct 30150192 ACCTGC--TTTACGTATCAGTACTATGACTTTTAACCTAAATGGTTTCAATTCCAACCAA 30150249 Query 158444 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCT 158503 | | | || ||||||| ||| | | || || | | ||| | | || | | | Sbjct 30150250 ACTAATGTAGACAATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGT 30150309 Query 158504 GGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAC 158557 ||| ||||||||| ||| |||| |||| || ||||||||||| || ||| Sbjct 30150310 AAGTTTGATATGGAAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGAC 30150363 >seq357 Length=580603 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 160112 TGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGA 160171 |||||| ||||| || || ||||| || || ||| | ||||| ||| |||||||| Sbjct 527712 TGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCATTTCCCAAGAAATCCATGCAGCAGA 527653 Query 160172 AGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCT 160210 |||||| ||||||||||| |||||||||||||| || || Sbjct 527652 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCT 527614 >seq7 Length=43454766 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 160170 GAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGT 160229 |||||||| ||||||||||| ||||| | |||||| ||||| || || |||| | ||| Sbjct 40226800 GAAGATCCTGAATTTGAGACTTTCTATATCAAAAATATCCTCTTAAATGAAGATATTCGT 40226859 Query 160230 GCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAG 160284 || ||| |||| || |||||||| ||| |||| |||| ||||| | ||||| Sbjct 40226860 GCTTGGATGGCGGCTCAAGATCAACCTCATAAAAATCTTATATTCCCTG-AGAAG 40226913 >seq4 Length=57251647 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/131 (75%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 159907 AGAACACACTGTAT--GAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAAC 159964 |||| | ||| ||| |||||||| || |||||||| || || ||| | |||| Sbjct 3793181 AGAAAATACTTTATTCGAAGATGGTGACGGTGCAAATACGTTCCGTGCTTTTAACCCAAC 3793240 Query 159965 TCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160024 ||||| || |||||||| || ||||||||||| |||| ||| ||||| || ||||| || Sbjct 3793241 TCAAGCTGAAGAGACTTATTCAATGGTCACTGCTAACCACTTTTGGTCCCAAATCTTTGG 3793300 Query 160025 TATTGCGTTTT 160035 |||| |||| Sbjct 3793301 GGTTGCTTTTT 3793311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548099794664520