Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq40061 524 9e-144 seq1 122 1e-22 >seq40061 Length=156973 Score = 524 bits (580), Expect = 9e-144 Identities = 705/977 (72%), Gaps = 6/977 (1%) Strand=Plus/Minus Query 72244 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 72303 ||| |||| |||||| || || | ||| |||| ||||| ||||| || |||||||| Sbjct 1128 TGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCC- 1070 Query 72304 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 72362 | ||| | || || || || |||||| | || ||||| |||||||||||||| || Sbjct 1069 TACCTTATTGACCGCAACTTCTGTATTCATTATCGCCTTCATTGCTGCTCCTCCAGTAGA 1010 Query 72363 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 72422 ||| || || || | ||||||||| | |||||| | | ||||| ||||| || ||||| Sbjct 1009 TATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCTC 950 Query 72423 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 72482 |||||| | |||| |||| || || || || || || ||||| || |||||||| Sbjct 949 TGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGATATGGGAAGC 890 Query 72483 AGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 72542 || || | || |||||||| || || || |||||||| || || || || | ||||| Sbjct 889 GGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 830 Query 72543 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAAT 72602 | | |||| | || ||||||||| | |||||||||| | | | || || || Sbjct 829 CTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGCCTGGGTAT 770 Query 72603 GAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCT 72662 | | |||||||| ||| ||||| ||||| ||||| | || || ||| || ||| | Sbjct 769 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 710 Query 72663 TGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTAC 72722 | || || | ||||| || ||||||||||||||||| |||| || || ||||| Sbjct 709 GATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 650 Query 72723 GTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATAT 72782 |||||||||||| | || ||||| || ||||||||||| || ||||| || || || || Sbjct 649 TTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATCCATTTCACAT 590 Query 72783 GGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGT 72842 | |||||||| ||| | ||||| || || |||||||| ||||| ||||| | || Sbjct 589 GTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 530 Query 72843 TACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTT 72902 || || | | ||||| || || || || ||||| | || || || | || Sbjct 529 AACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGGGTTACAGATT 470 Query 72903 CGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAAT 72962 ||| ||||| |||||||| ||||| || || ||||||||||| || || || |||| || Sbjct 469 CGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGAT 410 Query 72963 CTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCC 73022 |||||| ||||| |||||||| |||||||| ||||| |||||| | |||| | || Sbjct 409 CTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGGCTGCTTGGCC 350 Query 73023 TGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGG 73082 |||||| || | ||||| || | | ||||| |||| ||||| |||||||| || || Sbjct 349 TGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGG 290 Query 73083 ATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACA--TGGGGA 73140 ||||| ||||||||||| || || || || | | | || ||||| |||| Sbjct 289 TTTCAATTTCAACCAATCTGTAGTTGA--CAGTCAGGGTCGTGTTATCAACACTTGGGCT 232 Query 73141 GATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAAC 73200 ||| | | || | || |||||||| |||||||| ||||||||| | ||||| |||||| Sbjct 231 GATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCACAAC 172 Query 73201 TTCCCACTAGACCTAGC 73217 ||||| ||||||||||| Sbjct 171 TTCCCTCTAGACCTAGC 155 Score = 327 bits (362), Expect = 1e-84 Identities = 695/1038 (67%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | |||||||||||| ||| || |||||||| || | || |||||||| Sbjct 33076 TTTGATATTATGGATGATTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCTGGC 33135 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || || || ||||||||||| | || | ||||||||||| ||| || ||||| Sbjct 33136 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGTACAACTTTT 33195 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || |||||||| || ||||| | || || ||| | || || ||||| || Sbjct 33196 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAATTTCTTG 33255 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || || ||||| || || |||| || | | | ||| | ||| | || ||||| Sbjct 33256 ACCGCTGCAGTTTCCACTCCTGCGAATAGTTTAGCACATTCCTTGTTGCTACTATGGGGC 33315 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 || ||||||||||| ||| || || |||| ||||||||| || || |||| ||||| Sbjct 33316 CCTGAGGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTT 33375 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 73723 || | ||||| || || ||||| |||||||| ||| | | || || || |||| || Sbjct 33376 GCTCTCCATGGTGTTTTCGGACTAATAGGTTTTATGTTACGTCAATTCGAACTTGCTCGA 33435 Query 73724 CTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACG 73783 ||| | || ||||| || ||| | || || || || || || || || Sbjct 33436 TCTGTGCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTT 33495 Query 73784 AGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGT 73843 | || || || ||||| | || || | |||||||||| || || || || Sbjct 33496 TCTGTATTCCTGATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGC 33555 Query 73844 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 73903 || ||||| || ||||| | || | ||| | || || || || ||| || | || Sbjct 33556 GTAGCAGCTATATTTCGATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGACGTTGAAC 33615 Query 73904 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 73963 ||||||||||||||||| || || || || | || | || | ||||| || || ||| Sbjct 33616 CCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCAT 33675 Query 73964 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 74023 ||||| || ||| | || || || | ||||| || | | | | Sbjct 33676 GGTGCTACCGTAGAAAATACTTTATTCGAAGA---------------TG--GTGACGGTG 33718 Query 74024 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATT 74083 ||| |||| ||| | || || | || || || | |||||||||||| ||| | Sbjct 33719 CAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTC 33774 Query 74084 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 74143 ||||||||| | || ||||| || || ||||| | || ||||| || ||| | | ||| Sbjct 33775 ACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 33834 Query 74144 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 74203 || ||| ||||| | || ||||| || | ||| | |||| || | || | || Sbjct 33835 CATTTCTTTATGCTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTC 33894 Query 74204 GGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 74263 || || || || ||||| | || || ||||| || || ||||| || | ||||| ||| Sbjct 33895 GGCCTGGCTCTGAACCTCCGTGCCTATGACTTCGTTTCCCAAGAAATCCGTGCAGCGGAA 33954 Query 74264 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 74323 || || || ||||| || |||||||| || || || || | || |||||||| | || Sbjct 33955 GATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTCTTAAACGAAGGTATTCGTGCT 34014 Query 74324 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 74383 |||||| | || ||||| || ||||| ||| || | ||||| || || || | || Sbjct 34015 TGGATGGCGGCTCAGGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 34074 Query 74384 CGAGGCAACGCACTATAA 74401 || || ||||| || ||| Sbjct 34075 CGTGGAAACGCTCTTTAA 34092 >seq1 Length=68435666 Score = 122 bits (134), Expect = 1e-22 Identities = 191/268 (71%), Gaps = 13/268 (5%) Strand=Plus/Plus Query 72956 GATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 73015 |||| |||||| | ||| | |||||||| |||| || ||||| |||||| | |||| Sbjct 3686474 GATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATTTCTTCTTGGCTG 3686533 Query 73016 TATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACC 73075 | | |||||||| || | ||||| || | | |||| |||| ||| | || |||| Sbjct 3686534 TTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTATGACTTTTAACC 3686593 Query 73076 TTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGA-TTGT---ACCA 73131 | || | ||||| ||||||||||| ||||| || || | ||| |||| | || Sbjct 3686594 TAAATGATTTCAA-TTCAACCAATC---TGTAGTTG---ACCGTCAGAGTTGTGTTATCA 3686646 Query 73132 ACATGGGGA--GATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAA 73189 | | ||| ||| | | || | || || ||||| |||||||| ||||||||| | | Sbjct 3686647 ATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGAACGTA 3686706 Query 73190 ATGCACACAACTTCCCACTAGACCTAGC 73217 |||| ||||||||| | ||||||||||| Sbjct 3686707 ATGCTCACAACTTCTCTCTAGACCTAGC 3686734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572586726383880