Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq67 241 2e-57 seq3 212 8e-49 seq14 105 8e-17 seq5 87.8 2e-11 >seq67 Length=1088699 Score = 241 bits (266), Expect = 2e-57 Identities = 230/294 (78%), Gaps = 3/294 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| |||||||| |||||||||||||| ||||| | |||| || | ||| Sbjct 292272 GAGTGGATGTTTTCGATGGCTATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGCAATCTGG 292331 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| ||| |||| ||||||||| |||||||||||| ||||||||| Sbjct 292332 ACGTCGGACATGAAGCGGGCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAG 292391 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCG---ACACCCAGTGG 869809 ||||| |||||||| ||| ||||||||||||||| | |||| | | ||||||| Sbjct 292392 AAAGCAAGGACGTGGGAGATGAAGTGGCGCTCGTCGGGGGTGAGGGTGTGGAGCCAGTGG 292451 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | ||||||| |||||| ||||||||||||||||||| ||||| ||||||| ||| Sbjct 292452 GGGAGGTCGGCGGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCGACGGCCTTCTTG 292511 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGG 869923 ||||||||||| || || |||| ||||| ||||| | ||||||| |||| Sbjct 292512 TACATCTCCCACACCTGGGGGTACCGGATGGGGAACATCGAGAAGCGGTCGGGG 292565 Score = 165 bits (182), Expect = 1e-34 Identities = 208/285 (73%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||| |||| || || |||||||||||||||||| Sbjct 291993 CCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCGGCATGAGGCCGCGCTTC 292052 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||| ||||| ||| ||||| ||||| ||||| || || | ||| Sbjct 292053 TTGAGCCAGAAGATGGAACAGAAGGAGCCGGAGAAGAAGATCCCCTCAACAGCAGAGAAG 292112 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGT-CGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | | ||| ||||| || |||| || ||||| | | ||||||| | |||||| Sbjct 292113 GCCACGAGGCGCTCCGCGAAGGAGTCCGAGGAC-------TCAATCCACTGGAGCGCCCA 292165 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 | |||||| ||| ||||| ||| ||||| |||| || ||||| ||| |||| ||||| Sbjct 292166 CTGGGCCTTCTTCGCCACCGCCGGGACCGTCTCGACAGCACGAAAAAGGCGGTCTTTTTC 292225 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | | ||||| |||| |||| || | || || ||||| |||| Sbjct 292226 GTCAGGGTCTTTGATGTAGGATTCCAGCAAAAGAGAATACATCTC 292270 Score = 161 bits (178), Expect = 1e-33 Identities = 225/313 (72%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| ||| || || || | | |||||||||||| ||||| |||| |||||| || Sbjct 291677 CGCCTTCTGGTAGTCCCCGACCCTCTTCTCGAAAAAGTTCGTCTTCCCCTGGAGCGATAT 291736 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 |||||||||||| |||||| |||| | | ||| ||| |||| || | || | | Sbjct 291737 CAACTCCATCCAATCGAACGGATTGGCTGCCCCGTACAACTTCCCGCACCCCAACGCCCC 291796 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 | || || || || || ||||||||||| | || ||| | | | ||||| || | Sbjct 291797 CAAGAGCCGATCCGCCACGAACTCGATGTATTCGCTCATCAAATCCCCATTCATCCCCAC 291856 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 ||||||||||||| || |||| || ||||| ||||||| ||||| || ||| |||| Sbjct 291857 CAGCGCCACCGGCAACGCATCGCAGACGAACTCCCTCTCGATGTCGACAGCGTCGGCGAT 291916 Query 868930 GATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGG 868988 ||| || || | || || | | | |||||| | ||| | | |||||| ||||||| Sbjct 291917 GAT-TGACTTGATGCGATCCTCAGGGAGCTTGTGGTTGAGGAGGGAGTAGAGGAGGCAGG 291975 Query 868989 CAAAGTCGCAGTG 869001 | ||||||||||| Sbjct 291976 CGAAGTCGCAGTG 291988 >seq3 Length=60060032 Score = 212 bits (234), Expect = 8e-49 Identities = 225/296 (76%), Gaps = 3/296 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| ||||||||||||||||| ||||||||||| ||||| | |||| | | ||| Sbjct 42480088 GAGTGAATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGGGATCTGG 42480147 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| ||| |||| ||||||||| |||||||||||| ||||||||| Sbjct 42480148 ACGTCGGACATGAAGCGGACGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAG 42480207 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCG---ACACCCAGTGG 869809 || || |||| ||| ||| ||||||||||||||| | |||| | | ||||||| Sbjct 42480208 AAGGCGAGGATGTGGGAGATGAAGTGGCGCTCGTCGGTGGTGAGGGTGTGGAGCCAGTGG 42480267 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | ||| | ||| || ||||||||||||||||||| ||||| ||||||| ||| Sbjct 42480268 GGGAGATCGCTGGAGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCGACGGCCTTCTTG 42480327 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 ||||||||||| || | |||||||||| ||||| | |||||| | |||||| Sbjct 42480328 TACATCTCCCACACCGGAGGGTAGCGGATGGGGAACATCGAAAAGCGATCGGGGTT 42480383 Score = 185 bits (204), Expect = 1e-40 Identities = 211/284 (74%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||||||| ||| | |||||| |||| ||| || |||||||| || |||||| Sbjct 42479809 CCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACCACGCTTC 42479868 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||| |||||| ||| ||||| ||||| ||||| ||||||||||| Sbjct 42479869 TTGAGCCAGAAGATGGAGCAGAAGGAGCCAGAGAAGAAGATCCCCTCAACGGCGGCAAAT 42479928 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | ||| |||||||| || | ||| | ||| ||||||| | ||||| Sbjct 42479929 GCAACGAGGCGCTCGGCGAAAGACTCGGAGGACTC------GATCCACCGGAGGGCCCAT 42479982 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 | |||||| || |||||| ||| || || |||| ||||||||| ||| | || |||||| Sbjct 42479983 TGGGCCTTCTTTGTCACCGCCGGGACGGTCTCGACGGCGCGAAAAAGGCGATCTTTTTCG 42480042 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 |||| ||||||| |||| |||| ||||| || || |||| Sbjct 42480043 TCCGGATCCTTGATGTAGGATTCGAGGAGGAGGGAGTACATCTC 42480086 Score = 131 bits (144), Expect = 2e-24 Identities = 216/312 (69%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| ||| || || || | | |||||| || || ||||| || | || || || Sbjct 42479493 CGCCTTCTGGTAGTCTCCGACCCTCTTCTCGAAGAAATTAGTCTTCCCTTGAAGTGATAT 42479552 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 || ||||||||| ||| || || | | | ||| |||| | ||||| | | | Sbjct 42479553 CAGCTCCATCCAGTCGAATGGATTCGCCACCCCGTACAACTTTCCACATCCCAAAGCCAA 42479612 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 | || || || || || ||||| |||||||||| ||| | | ||||||| || | Sbjct 42479613 CAAGAGCCGATCCGCCACGAACTCAATGTACTGGCTCATCAAATCCCCGTTCATCCCCAC 42479672 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 |||||||||||||||| |||| || ||||| |||| || || || || ||| |||| Sbjct 42479673 CAGCGCCACCGGCAGCGCGTCGCAAACGAACTCCCTCTCAATGTCCACAGCGTCGGCGAT 42479732 Query 868930 GATCTGCCTGGGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 |||| | || ||| ||||| ||||| | ||| | | |||||| |||||||| Sbjct 42479733 GATCGACTTGATGCGGTCCTCCGAGAGCTTGCGGTTGAGGAGGGAGTAGAGGAGGCAGGC 42479792 Query 868990 AAAGTCGCAGTG 869001 ||||||||||| Sbjct 42479793 GAAGTCGCAGTG 42479804 >seq14 Length=24379743 Score = 105 bits (116), Expect = 8e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || ||||| |||| |||||||||||| || | | || Sbjct 1079984 GCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCGGGAGGTGA 1079925 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| | | || |||||| |||||| | ||| |||| | Sbjct 1079924 TGGTGGGCTTCTTGTTGTAACGGGCAAGACGGGAGGCCTCCTGGGCGAGCTTCTCGAAGA 1079865 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||| | |||| | ||||| || | ||| |||| Sbjct 1079864 TGTCGTTGATGAAGGAGTTCATGATGCCCATGGCCTTGCTCGAGATCCCGATGTCCGGGT 1079805 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| || |||||| ||||| Sbjct 1079804 GGACCTGCTTCAGGACCTTGAAGATG 1079779 >seq5 Length=51955539 Score = 87.8 bits (96), Expect = 2e-11 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || || ||||| | | || ||||| |||| |||||||||||| || | | ||| || Sbjct 2104665 GCTAGCTCGCCAGGGAGGACGAGGCGAACGGAGGTCTGGATCTCCCGGGAGGTGATGGTC 2104724 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| || | |||| ||| ||||| | ||| || | |||||| Sbjct 2104725 GGCTTCTTGTTGTAGCGGGCCAAGCGGGACGCCTCCTGGGCGAGCTTCTCAAAGATGTCG 2104784 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 |||| || |||||||||| ||| | |||| |||||||||| | ||| || || ||| Sbjct 2104785 TTGATGAAGGAGTTCATGATGCCCATGGCCTTGCTGGAGATGCCGATGTCCGGATGGACC 2104844 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 ||||| | ||||||| ||||| Sbjct 2104845 TGCTTCAACACCTTGAAGATG 2104865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103851606734337