Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq389 102 7e-17 seq160 89.7 4e-13 seq12 86.0 5e-12 >seq389 Length=334988 Score = 102 bits (112), Expect = 7e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| || || | ||| |||||||||||| | |||| || || |||||| |||| Sbjct 298380 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTCGCTGGAAAACAGTTGGAA 298439 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| | |||| |||| |||||||||||||||||||| || || ||||| |||| ||| Sbjct 298440 GATGGCCGAACCTTGGCTGATTACAACATTCAAAAAGAGTCAACATTGCATCTGGTTTTA 298499 Query 110486 AGACTGCGAGGGGGAAAAA 110504 || || | || |||| || Sbjct 298500 AGGCTTAGGGGTGGAACAA 298518 >seq160 Length=614534 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| || || | ||| |||||||||||| | |||| ||| || || ||| |||| Sbjct 340135 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTTGCTGGAAAGCAGTTGGAA 340194 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| |||| | || |||||||||||||||||||| || || |||| |||| ||| Sbjct 340195 GATGGTCGAACCCTAGCTGATTACAACATTCAAAAAGAGTCAACACTGCATCTGGTTTTA 340254 Query 110486 AGACTGCGAGGGGGAAAAA 110504 || || | || |||| || Sbjct 340255 AGGCTTAGGGGTGGAACAA 340273 >seq12 Length=28800575 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||| | ||||| || ||||| ||| | || ||| | Sbjct 14046376 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACCCTTGAGGTAGAGAGCTCC 14046435 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | ||||| ||||| || || || ||| | || ||||| Sbjct 14046436 GACACCATTGACAATGTAAAGGCTAAGATCCAGGATAAGGAGGGCATCCCACCAGATCAG 14046495 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||||||||||||||||| | ||| |||| || |||||| Sbjct 14046496 CAGCGTCTCATCTTTGCTGGTAAACAGCTGGAGGATGGGCGCACACTGGCAGACTACAAC 14046555 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||| |||||||| Sbjct 14046556 ATTCAAAAGGAATCTAC 14046572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412640032798073