Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq14 91.5 2e-13 seq11 87.8 3e-12 >seq14 Length=24379743 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||| || ||||| || || | ||||| || || || || |||| || || | | | Sbjct 11038989 TGCAGATCTTCATCAAGACCCTTACAGGGAAGACTATCACCCTTGAGGTTGAGAGCTCA- 11039047 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | ||||| ||| || || || ||| || ||||| ||||| ||||| Sbjct 11039048 GACACCATTGATAATGTGAAAGCAAAGATTCAGGATAAGGAGGGCATCCCACCTGATCAG 11039107 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | || || ||||| || || || | || ||| | | || ||| ||||||| || Sbjct 11039108 CAGCGCCTGATATTTGCTGGGAAGCAGCTTGAGGATGGTCGCACATTAGCAGATTACAAC 11039167 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || |||||||| || ||| | || || || | ||||||||||| || Sbjct 11039168 ATCCAAAAAGAGTCCACTCTTCACTTGGTCCTCCGATTAAGAGGTGG 11039214 >seq11 Length=30068910 Score = 87.8 bits (96), Expect = 3e-12 Identities = 218/311 (70%), Gaps = 34/311 (11%) Strand=Plus/Plus Query 87166 ATATATTCCATCAGA-TTATAATAATATCATTTATGATATTG-TAAATAAT-TCAT-TAA 87221 ||||||| ||||| | |||||||||||| ||||||||| | | ||||| | || || Sbjct 14426470 ATATATTACATCATAATTATAATAATAT---TTATGATATAGAGATATAATATAATCTAT 14426526 Query 87222 TTGAATATGaatcaaatat-----tgtaatacaactcaataata--ttaatcatacacat 87274 | ||||| | | || ||| | ||||| ||| ||||||| ||||| ||| | || Sbjct 14426527 TATAATATTATTAAATTATAACAATATAATATAACATAATAATATTTTAATAATA-ATAT 14426585 Query 87275 agtttaa-taaataataatacaatactttat----tatgaacacaattg-tgata--tta 87326 | | ||| || ||||||||| |||| |||| ||| | ||| | | | ||| | | Sbjct 14426586 AATATAATTATATAATAATATAATATATTATAATCTATTATTACATTAGATTATAACTAA 14426645 Query 87327 tat-ttattgataatataataaAATTAATACCATGCCTATATGTttatacga-aagatat 87384 ||| |||| || |||| |||| ||||| || ||||| ||||| | | |||| Sbjct 14426646 TATATTATAAATTATATTATAATTATAATAATAT---TATATTATTATATTATATTATAT 14426702 Query 87385 tgtaataatattaga-atta-aataaatttatttacaatatatatactataaaatatatt 87442 ||||||||||| | | || ||||| ||||| |||||||||| ||||| ||| | Sbjct 14426703 GATAATAATATTATATAGTATAATAA---TATTT-TAATATATATAATATAATATAATAT 14426758 Query 87443 aataataattt 87453 |||| || ||| Sbjct 14426759 AATATTATTTT 14426769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785772717348120