Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq40061 567 9e-157 seq14 168 8e-37 seq1239 127 2e-24 seq1 107 2e-18 >seq40061 Length=156973 Score = 567 bits (628), Expect = 9e-157 Identities = 723/989 (73%), Gaps = 5/989 (1%) Strand=Plus/Minus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 |||||| | ||| |||| || | ||||| || || | || |||||||| || || Sbjct 1137 TTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1078 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || || | ||| | |||||| |||| ||||| |||||||| | |||||||| Sbjct 1077 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTCATTATCGCCTTCATTGCTGCTCC 1019 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || || || || || || |||||||| || ||||||| || | ||||| ||||| Sbjct 1018 TCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAA 959 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 || ||||||||||| || | || |||| || || ||| | || || ||||| || Sbjct 958 TATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGAT 899 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 |||||||| ||||| ||||||||||| | || || || ||||||| | || | || Sbjct 898 ATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 839 Query 177857 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 177916 | |||||| | | || | | || ||||| ||||||||||||||| | ||| Sbjct 838 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 779 Query 177917 TCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGC 177976 || |||||||| || ||||| ||||||||| || || ||||||||||| || | || Sbjct 778 CCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 719 Query 177977 AGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTA 178035 || ||||| | |||| ||| | |||||||| ||||| |||| ||||||| | || | Sbjct 718 TGT-TTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 660 Query 178036 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACC 178095 | ||||||||||| |||| |||| |||||||||| || |||||||| ||||||||||| | Sbjct 659 TATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATC 600 Query 178096 CGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 178155 | || |||||| | ||||| ||||| |||||||| || || || ||| ||||||||||| Sbjct 599 CATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 540 Query 178156 GAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATG 178215 | | || || ||| | || | || || || |||| || || || | Sbjct 539 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGG 480 Query 178216 GTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCG 178275 |||||| ||||| ||||| |||||||| ||||| ||||| || || |||||||| || | Sbjct 479 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 420 Query 178276 GTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCG 178335 | || ||||||||||||||||| |||||||| || ||||| | || |||||| | | Sbjct 419 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGG 360 Query 178336 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTA 178395 | || ||||||||||| || ||||||||||| || | ||| | || ||||| || | Sbjct 359 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 300 Query 178396 ACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACA 178455 |||| ||||| ||||| |||||||| || | | ||| | || || ||||| |||||| Sbjct 299 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACA 240 Query 178456 CATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAATA 178515 | ||||| || | |||| ||||| || || |||||||| ||||| ||| | ||| Sbjct 239 CTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAAT- 181 Query 178516 GCACATAACTTCCCGCTTGATCTTGCAGC 178544 || || |||||||| || || || || || Sbjct 180 GCTCACAACTTCCCTCTAGACCTAGCTGC 152 Score = 540 bits (598), Expect = 1e-148 Identities = 728/1006 (72%), Gaps = 6/1006 (1%) Strand=Plus/Plus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||| ||| | |||| || || || ||||| || |||||||| || | || Sbjct 33086 TGGATGATTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCTGGCCTATTGCTCT 33145 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||||||| | || | || |||||| |||| || ||| ||||||| || | Sbjct 33146 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGTACAACTTTTGTAACTTCAT 33205 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCT 179127 |||| |||||||| | || ||||||||| | |||||| || |||||| || || || Sbjct 33206 GGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAA-TTTCTTGACCGCTGCA 33264 Query 179128 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTT-CTACTTTGGGGTCCTGAGTC 179186 || || || ||||| || | | | ||||| ||| || ||||| ||||| |||||| | Sbjct 33265 GTTTCCACTCCTGCGAATAGTTTAGCACATTC-CTTGTTGCTACTATGGGGCCCTGAGGC 33323 Query 179187 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCA 179246 || ||| |||| || ||||| ||| | || || || |||| ||| || |||||||| Sbjct 33324 ACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCA 33383 Query 179247 CGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCG 179305 |||| |||| ||||| || || ||| | ||||| || ||||| || || ||| | Sbjct 33384 TGGTGTTTTCGGACTAATAGGTTTTATGTTACGTCAATTCGAACTTGCTCGATCTGTGCA 33443 Query 179306 GTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTAT 179365 | | || ||||| ||||| || || || ||| ||| ||||| || || ||| ||||| Sbjct 33444 AT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTAT 33502 Query 179366 TTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGG 179425 | || || || ||||| || ||||| |||||||||||||||| ||||| || || | Sbjct 33503 TCCTGATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGCGTAGCAG 33562 Query 179426 CGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTC 179485 | || ||| ||||| | || ||||| ||||| || || || ||||| | ||||| |||| Sbjct 33563 CTATATTTCGATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGACGTTGAACCCATTTC 33622 Query 179486 ACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAA 179545 | |||||||||||||| || | | || | ||||||||| | ||||||||||| | | Sbjct 33623 ATATGATGGGAGTTGCCGGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTA 33682 Query 179546 CTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACT 179605 | ||||| ||||| || | |||||||| || ||||| ||||| || || || Sbjct 33683 CCGTAGAAAATACTTTATTCGAAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACC 33742 Query 179606 CTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCT 179665 | || |||| || ||||| ||||| ||||| || || ||||| |||||||| || |||| Sbjct 33743 CAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCT 33802 Query 179666 TCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCA 179725 | |||||| | ||| |||||| |||||||| || ||||||| ||| ||||| || || | Sbjct 33803 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAA 33862 Query 179726 TGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATG 179785 ||| | ||| | | || |||| | | || || ||||| || || ||||| |||| Sbjct 33863 CCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCCTATG 33922 Query 179786 ATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAA 179845 | || || ||||| ||| | ||||| ||||||||||| || ||||| ||||| || | Sbjct 33923 ACTTCGTTTCCCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCA 33982 Query 179846 AGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATG 179905 | || || || | || ||||| | ||||||||| |||| || ||||| || |||| Sbjct 33983 AAAATATCCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAGGATCAGCCTCATG 34042 Query 179906 AAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 ||||| | || ||||| || || || ||||| |||| ||||| || Sbjct 34043 AAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 34088 >seq14 Length=24379743 Score = 168 bits (186), Expect = 8e-37 Identities = 248/351 (71%), Gaps = 0/351 (0%) Strand=Plus/Plus Query 179323 GCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCATCTACCCACTT 179382 || ||||| || ||| ||| ||||| || || ||| | |||| || || || ||| | Sbjct 16929123 GCAATTGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTATATTCCTGATTTATCCATTG 16929182 Query 179383 GGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTA 179442 || | ||| |||||||||||||||| |||||||| || | || ||| |||| | Sbjct 16929183 GGTCGATCTGGTTGGTTCTTTGCGCCCAATTTTGGTGTAGCAACTATATTTCTATTCATC 16929242 Query 179443 CTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGCA 179502 ||||| || ||| | || | || ||||| | ||||| ||||| |||||||||||||| Sbjct 16929243 CTTTTTTTCCAAAGGTTTTATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCT 16929302 Query 179503 GGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTG 179562 || | | || | ||||||||| | ||||||||||| | || ||||| |||| || Sbjct 16929303 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATATTTTA 16929362 Query 179563 TATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAGGAGGAG 179622 | |||||||| || ||||| ||||| | || || || | || |||| || ||| Sbjct 16929363 TTCGAAGATGGTGACGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAG 16929422 Query 179623 ACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTT 179673 || ||| ||||| || | || |||||||| || ||||| | |||| Sbjct 16929423 ACTTATGTAATGGTCACTACTCACTACTTTTGGTCCCAAATCTTTGAGGTT 16929473 >seq1239 Length=80461 Score = 127 bits (140), Expect = 2e-24 Identities = 163/225 (72%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 179316 TTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCATCTA 179375 ||| ||||| || || || ||| ||| ||||| | || ||| ||||| |||| || Sbjct 69230 TTATAATGCAATCGCATTCTCTGTTCCAATTGCTATTTTTGTTTCCGTATTCTTCATTTA 69289 Query 179376 CCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAG 179435 ||||| || ||||| |||||||||||||| || |||||||| || || ||| | Sbjct 69290 TCCACTGGGTCAATCTAGTTGGTTCTTTGCACC-----CAGGTGTTGCAGCTATATTTTG 69344 Query 179436 ATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGG 179495 |||| | || ||||| ||||| || || || |||| | ||||| ||||| ||| ||| Sbjct 69345 ATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGACGGG 69404 Query 179496 AGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGG 179540 |||||| || | | ||| ||||||||| | |||||||||| Sbjct 69405 AGTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGG 69449 >seq1 Length=68435666 Score = 107 bits (118), Expect = 2e-18 Identities = 192/278 (69%), Gaps = 2/278 (1%) Strand=Plus/Plus Query 178267 GTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACT 178326 |||| || || || ||||||||| ||||| | |||||||| || | || | || | Sbjct 3686462 GTTATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATT 3686521 Query 178327 TCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCA 178386 ||||| | || | ||||||||||| | ||||||||||| || | || | || | Sbjct 3686522 TCTTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTA 3686581 Query 178387 TGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTG 178446 || | |||||||| |||| ||||| |||||||| || | | ||| | || | ||| Sbjct 3686582 TGACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTG 3686640 Query 178447 TCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACG 178506 | |||| || ||| | || | |||| | || ||| || |||||||| ||||| | Sbjct 3686641 TTATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATG 3686700 Query 178507 AAAGAAATAGCACATAACTTCCCGCTTGATCTTGCAGC 178544 || | ||| || || |||||| | || || || || || Sbjct 3686701 AACGTAAT-GCTCACAACTTCTCTCTAGACCTAGCTGC 3686737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605363904578760