Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq12 98.7 1e-15 seq14 95.1 1e-14 >seq12 Length=28800575 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || ||||||| |||||||| ||||| |||||||| || || ||||| | || || Sbjct 14046584 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGTGTGCGCCCATCCTCC 14046525 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 || |||||||||||| |||| ||||| |||||||| || || ||||| || || || Sbjct 14046524 AGCTGTTTACCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGG 14046465 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || || |||| | || | ||||| | | ||||| |||| || | ||||| Sbjct 14046464 ATCTTAGCCTTTACATTGTCAATGGTGTCGGAGCTCTCTACCTCAAGGGTGATGGTCTTT 14046405 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| | || || || || || ||||| Sbjct 14046404 CCGGTAAGAGTCTTCACAAAGATCTGCAT 14046376 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || ||||||| |||||||| ||||| |||||||| || || |||| | || || Sbjct 14035544 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGCGTGCGCCCATCCTCC 14035485 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 || |||||||||||| |||| || || |||||||| || || ||||| || || || Sbjct 14035484 AGCTGTTTACCAGCAAAGATAAGCCGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGG 14035425 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 ||||| |||| | || | ||||| | | ||||| || | || | ||||| Sbjct 14035424 ATTTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCGAGGGTGATGGTCTTT 14035365 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || | || ||||| || || ||||| Sbjct 14035364 CCAGTGAGGGTCTTTACAAAGATCTGCAT 14035336 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || ||||||| |||||||| ||||| |||||||| || || |||| | || || Sbjct 14079121 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAACGTGCGCCCATCCTCC 14079062 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | |||||||||||| |||| ||||| |||||||| || || ||||| || || || Sbjct 14079061 AACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGG 14079002 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || || |||| | || | ||||| | | ||||| |||| || | ||||| Sbjct 14079001 ATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCAAGGGTGATGGTCTTT 14078942 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || | || || || || || ||||| Sbjct 14078941 CCAGTGAGGGTCTTCACAAAGATCTGCAT 14078913 >seq14 Length=24379743 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGA 137255 |||| || || |||| |||||||| || || ||||||||||| || |||| || | Sbjct 11039430 CGCAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTCCA 11039371 Query 137256 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315 || || ||||| || |||||| |||| ||||| ||||| || ||||| || ||||| || Sbjct 11039370 -TCCTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGGGATTCCTTCCTT 11039312 Query 137316 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 ||| ||| ||| || | | || | ||||| | | || || || | ||| | Sbjct 11039311 GTCCTGAATCTTTGCCTTGACATTATCAATGGTGTCAGAGCTCTCCACCTCCAAAGTGAT 11039252 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||| || |||| || || || || || ||||| Sbjct 11039251 CGTCTTCCCTGTCAGAGTCTTGACAAAGATCTGCAT 11039216 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 137243 || |||| ||| || | || || |||| || || |||||||| ||||||||||| ||| Sbjct 11039214 CCACCTCTTAATCGGAGGACCAAGTGAAGAGTGGACTCTTTTTGGATGTTGTAATCTGCT 11039155 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||||| || || || || || |||||| | ||||| || |||||||| || || Sbjct 11039154 -AATGTGCGACCATCCTCAAGCTGCTTCCCAGCAAATATCAGGCGCTGCTGATCAGGTGG 11039096 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||| || || || ||| ||| ||| | | || | ||||||| | || || Sbjct 11039095 GATGCCCTCCTTATCCTGAATCTTTGCTTTCACATTATCAATGGTGTCTGAGCTCTCAAC 11039036 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | ||||| || || | || || | ||| || ||||| Sbjct 11039035 CTCAAGGGTGATAGTCTTCCCTGTAAGGGTCTTGATGAAGATCTGCAT 11038988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488299355485200