Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq16 87.8 4e-12 seq12 84.2 5e-11 >seq16 Length=21371083 Score = 87.8 bits (96), Expect = 4e-12 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 304922 ATTGCTGGAATTATGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAA 304981 ||| || | | ||||||||| | || ||||||| |||| | || ||| | ||| Sbjct 20655474 ATTTCTTGCAATATGCAGGCTACACAGCGATCTGGACGACCCATCAAATCTAT-ATGCAG 20655532 Query 304982 CGCATTAAAGGT-AAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTT 305040 | | |||| ||||| ||||| ||| ||||||| | |||||||| ||||||||||| Sbjct 20655533 TAGACTTAAGGCGAAAGAAGGTCGAATTAGAGGTAACTTGATGGGAAAGCGTGTTGATTT 20655592 Query 305041 TAGTGCAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCC 305100 | ||| ||| || ||||| ||||| | ||| | || ||||||| ||||| || Sbjct 20655593 TTCAGCACGAACAGTCATCACTCCTGACCCAACAATCAACATTGATGAATTGGGAGTGCC 20655652 Query 305101 AATTGAA--ATTGCTTTAAAACTAACATTTCCAGA 305133 ||| | || ||||| || ||||||| ||||| Sbjct 20655653 --TTGGAGCATAGCTTTGAATCTAACATACCCAGA 20655685 >seq12 Length=28800575 Score = 84.2 bits (92), Expect = 5e-11 Identities = 121/168 (72%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||||| |||||| |||| || || ||||||||||| || |||| ||| | Sbjct 18984248 GATTATGTTCTTTTCAATCGGCAGCCTAGTCTTCATAAAATGTCCATCATGGGTCACCGA 18984307 Query 305384 GTCAAAGTATTATCTGGATTGACATTTCGATTAAA--TGTAAGTG-CTTGTACGCCTTAT 305440 | ||| | | | | ||| ||||| ||||| ||| ||| ||| | || || Sbjct 18984308 ATTAAAATCATGCCATACTCGACTTTTCGCTTAAACTTGTCTGTGACTTCT---CCATAC 18984364 Query 305441 AATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||| ||||||||||| ||||| ||||| |||||||| || |||||| Sbjct 18984365 AATGCTGATTTTGATGGTGATGAGATGAACATGCATGTTCCCCAATCA 18984412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186203630871621