Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq14 105 4e-18 seq10 104 2e-17 seq6 98.7 7e-16 seq12 87.8 1e-12 seq160 84.2 1e-11 >seq14 Length=24379743 Score = 105 bits (116), Expect = 4e-18 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||| || | |||||| || || || || || || ||||||||||| | Sbjct 11039443 ACCACCCCTCAGCCGCAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGC 11039384 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| | || || | ||| ||||| ||||| || | ||||||||| ||| | || Sbjct 11039383 CAGCGTGCGTCCATCCTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGG 11039324 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| ||| || || | |||| || | |||||| ||| | Sbjct 11039323 GATTCCTTCCTTGTCCTGAATCTT-TGCCTTGACATTATCAATGGTGTCAGAGCT---CT 11039268 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | |||||||| || ||||| | || || |||||||||||||| Sbjct 11039267 CCACCTCCAAAGTGATCGTCTTCCCTGTCAGAGTCTTGACAAAGATCTGCAT 11039216 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| || || | ||||| || |||||| ||||||||| ||||||||||| | Sbjct 11039214 CCACCTCTTAATCGGAGGACCAAGTGAAGAGTGGACTCTTTTTGGATGTTGTAATCTGCT 11039155 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || || | || || || ||||| |||| ||||||||||| | || Sbjct 11039154 AATGTGCGACCATCCTCAAGCTGCTTCCCAGCAAATATCAGGCGCTGCTGATCAGGTGGG 11039095 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | || || || || ||| || || || |||| || | |||||| ||| || Sbjct 11039094 ATGCCCTCCTTATCCTGAATCTT-TGCTTTCACATTATCAATGGTGTCTGAGCT---CTC 11039039 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || ||||| | || || | ||||||||||| Sbjct 11039038 AACCTCAAGGGTGATAGTCTTCCCTGTAAGGGTCTTGATGAAGATCTGCAT 11038988 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33520 TCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCG 33579 |||||||| | | ||| | || | || ||||| ||||| || |||||||| || Sbjct 11039673 TCACCACCACGGAGACGCAGGACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCT 11039614 Query 33580 GAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGC 33639 | || ||||| | || |||| || || |||||||| || | ||||||||||| | Sbjct 11039613 GCAAGAGTGCGACCATCCTCCAGCTGCTTCCCGGCAAAGATGAGGCGCTGCTGATCAGGG 11039554 Query 33640 GGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTC 33698 || | || || ||||| ||| || ||| | |||| || | |||||| || Sbjct 11039553 GGTATGCCCTCCTTGTCCTGAATCTT-TGTCTTCACATTATCAATGGTGTCAGAACTCTC 11039495 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| || | || || || || |||||||| || || ||||||||||||||| Sbjct 11039494 CACCTCCAAGGTAATTGTCTTCCCTGTTAAAGTCTTAACAAAGATCTGCATA 11039443 >seq10 Length=31890735 Score = 104 bits (114), Expect = 2e-17 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || ||||| ||| ||||| ||||| ||||| | || ||||| | || || Sbjct 15231379 CACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGGCCATCCTC 15231438 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || ||| ||||| ||||| |||||||||||||| || | || | ||||| ||||| Sbjct 15231439 CAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTG 15231498 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTT 33717 |||||| ||| || | ||| | ||||| | | | || || |||| ||||| || Sbjct 15231499 AATTTTAGCCTTC-ACGTTGTCAATCGTGTC-CGAGCTCTCGACCTCAAGAGTGATGGTC 15231556 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || | || || ||||||||||||||| Sbjct 15231557 TTCCCAGTGAGGGTCTTGACAAAGATCTGCATA 15231589 >seq6 Length=44357769 Score = 98.7 bits (108), Expect = 7e-16 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| ||| ||||| ||||||||| ||||| ||||||| ||| ||||| |||| || Sbjct 21860768 CACCAGATGAAGAGTAGACTCTTTTTGGATGTTATAATCGGCGAGGGTGCGACCGTCCTC 21860827 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | ||| |||||||| || |||| ||||||||| || |||| | |||||| || || Sbjct 21860828 AAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATACCTTCCTTATCTTG 21860887 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTT 33717 ||| || || | | | ||| | ||||| | | | || || || | ||||| || Sbjct 21860888 AATCTTGGCCTTGA-CGTTGTCGATCGTGTC-CGAGCTCTCGACCTCCAAGGTGATGGTC 21860945 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || | || || || ||||||||||| Sbjct 21860946 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 21860977 >seq12 Length=28800575 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| ||||| || ||||| |||||||| || | |||||||| | || ||| Sbjct 14046584 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGTGTGCGCCCATCCTCC 14046525 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| || ||||| || | ||||||||||||| | || | || || || || Sbjct 14046524 AGCTGTTTACCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGG 14046465 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || | | |||| ||| | ||||||| || || |||| ||||| || || Sbjct 14046464 ATCTT-AGCCTTTACATTGTCAATGGTGTCGGAGCTCTCTACCTCAAGGGTGATGGTCTT 14046406 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || |||||||||||||| Sbjct 14046405 TCCGGTAAGAGTCTTCACAAAGATCTGCAT 14046376 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||||||||| |||||||| |||| | ||||| | || |||| ||||||||| ||||| Sbjct 14045702 CTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCATCCTCCAGTTGTTTTCCAGCAAA 14045643 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | | |||||||||| | || | || || ||||| ||| || |||| ||| Sbjct 14045642 GATGAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTAGCCTTCA-CAT 14045584 Query 33678 AGTCACG-GTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTT 33733 ||| ||||| ||| || || || | |||||||| || || || | || | Sbjct 14045583 TATCAATTGTGTCAGAGCTC---TCAACTTCCAGGGTGATCGTCTTGCCAGTAAGGGTCT 14045527 Query 33734 TTACAAAGATCTGCAT 33749 | |||||||||||||| Sbjct 14045526 TCACAAAGATCTGCAT 14045511 >seq160 Length=614534 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | | ||| |||| ||| || || ||||||||| ||||||||||| | Sbjct 340268 CCACCCCTAAGCCTTAAAACCAGATGCAGTGTTGACTCTTTTTGAATGTTGTAATCAGCT 340209 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || ||||| || ||||| ||||||||||| | || |||||| | || Sbjct 340208 AGGGTTCGACCATCTTCCAACTGCTTTCCAGCAAAAATCAATCTTTGTTGATCTGGGGGT 340149 Query 33643 ACACCTTCTTTGTC 33656 | ||| || ||||| Sbjct 340148 ATACCCTCCTTGTC 340135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328543512429120