Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq40061 551 2e-152 seq1 154 4e-33 >seq40061 Length=156973 Score = 551 bits (610), Expect = 2e-152 Identities = 703/961 (73%), Gaps = 8/961 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| ||||| || ||||||| || | || ||| || | Sbjct 1110 AACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 1052 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| |||||||| || |||||||| || || ||||| || |||||||| || || || Sbjct 1051 TTCTGTATTCATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 992 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 ||| || |||| ||| || ||||||||||| || || || || ||| | | |||| Sbjct 991 ACCAGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCGAC 932 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || ||||| | || || || || || |||||||| || ||||||| Sbjct 931 TTCTGCA--GCTATCGGTTTGCATTTTTATCCGATATGGGAAGCGGCATCTGTTGATGAG 874 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||| | ||||| || || || | | || | || | |||||| | |||| || | Sbjct 873 TGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 814 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||||||||| || |||||||||||||| | || || || ||| | || |||||| | Sbjct 813 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGCCTGGGTATGCGTCCTTGGATTGCT 754 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGT 29076 || ||||| |||||||| || ||||| || |||| |||||| | ||||||| | ||| Sbjct 753 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGT 694 Query 29077 CAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTG 29136 ||||| ||| || | |||||||| || || || || || ||||||| |||| | Sbjct 693 CAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATT 634 Query 29137 GTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGA 29196 || ||||| || ||||| ||||| || ||||| || || |||||| |||| || ||||| Sbjct 633 GTATTCCAGGCGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGT 574 Query 29197 GTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTG 29256 || ||||| ||||| ||||| ||||| ||||| ||||| | || || || | | ||| Sbjct 573 GTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGAT 515 Query 29257 C-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGA 29315 | | || || |||||| || ||| || ||||||| || || ||||| ||||| Sbjct 514 CAGGGAAACCACTGAAAACGAATCTGCTAATGCGGGTTACAGATTCGGTCAAGAGGAAGA 455 Query 29316 GACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTC 29375 |||||||| |||||||| ||||| ||||| ||||| || |||||||||||||||||| Sbjct 454 AACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 395 Query 29376 TTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 29435 |||||| ||| ||||| |||| |||||| | ||||| ||||| || ||||| || || Sbjct 394 TTTCAACAATTCTCGTTCCTTACATTTCTTCTTGGCTGCTTGGCCTGTAGTAGGTATCTG 335 Query 29436 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCA 29495 |||| |||| || || || ||| ||||| || || || || ||||| || || ||||| Sbjct 334 GTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 275 Query 29496 GTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGC 29555 || | | |||| | |||||||| || || |||||||||||| | ||||||| || Sbjct 274 ATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACACTTGGGCTGATATCATCAATCGTGC 215 Query 29556 TAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGC 29615 |||||| || | |||||||||||||| ||||||||||| |||||||| || || || || Sbjct 214 TAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 155 Query 29616 T 29616 | Sbjct 154 T 154 >seq1 Length=68435666 Score = 154 bits (170), Expect = 4e-33 Identities = 200/275 (73%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 29342 GTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACT 29401 |||| ||||| || ||||||||| ||||| || |||||| ||| | || |||| | Sbjct 3686462 GTTATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATT 3686521 Query 29402 TCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAA 29461 ||||| | |||| ||||| || ||| | || |||||| |||| || | || ||| | Sbjct 3686522 TCTTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTA 3686581 Query 29462 TGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTG 29521 || | ||||| || || | ||| || || ||||| || | | ||| | || ||| Sbjct 3686582 TGACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTG 3686640 Query 29522 TCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATG 29581 | || ||||||||| ||||| | ||||| ||||||| || || | ||||||||||||| Sbjct 3686641 TTATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATG 3686700 Query 29582 AGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 | ||||||||||| |||||| | || || || ||| Sbjct 3686701 AACGTAATGCTCACAACTTCTCTCTAGACCTAGCT 3686735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146595827599106