Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq40061 601 1e-167 seq1 111 4e-20 seq4 80.6 8e-11 >seq40061 Length=156973 Score = 601 bits (666), Expect = 1e-167 Identities = 727/978 (74%), Gaps = 16/978 (2%) Strand=Plus/Minus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| ||||||| || || ||||||||||| || || ||||| || ||||||| | Sbjct 1130 ACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCC 1071 Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGT 18848 | | || ||| | || ||| | ||| |||||||| |||||||||||||| ||||| || Sbjct 1070 C-TACCTTATTGACCGCAACT-TCTGTATTCATTATCGCCTTCATTGCTGCTCCTCCAGT 1013 Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 ||| |||||||| || || || || ||| | || ||| |||||||||||||| || || Sbjct 1012 AGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAATATTAT 953 Query 18909 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 18966 || || ||| | |||||| | ||| || ||||| | || || || || || ||| Sbjct 952 CTCTGGTGCCATTATTCCGACTTCTGCA--GCTATCGGTTTGCATTTTTATCCGATATGG 895 Query 18967 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19026 ||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 894 GAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTA 835 Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 19086 |||||| | |||| || | ||||||||| || |||||||||||||| | || || Sbjct 834 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGCCTG 775 Query 19087 GGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTC 19146 || ||||| ||||||||| |||||| || |||||||||||||| || || |||| || Sbjct 774 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 715 Query 19147 TTCCTTGTCTATCCATTTGGTCAAGG---TTCCTTTAGCGACGCTATGCCTTTGGGTATT 19203 ||| | |||| || |||||||||| || || | || | ||||||||| || || Sbjct 714 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCT---GATGGTATGCCTTTAGGAATA 658 Query 19204 AGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCG 19263 |||||| ||||||| |||| ||||||||||||| ||||| |||||||| ||||| || Sbjct 657 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATCCA 598 Query 19264 TTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGT 19323 || |||||| | ||||| |||||||| |||||||| || ||||| ||||| ||||| ||| Sbjct 597 TTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 538 Query 19324 TCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGG 19382 || |||| || || | ||| | | ||||| |||||| | | |||| || || Sbjct 537 TC-CTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGGG 479 Query 19383 CTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGG 19442 |||| || || ||||| ||||| |||||||| || || ||||||||||| |||||||| Sbjct 478 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 419 Query 19443 TCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGC 19502 || | || ||||| || || ||||||||| ||||| |||||||||| ||||| Sbjct 418 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGGC 359 Query 19503 TGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAA 19562 |||||||||||| || || || ||||| | || | || | || || ||||| ||||| Sbjct 358 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 299 Query 19563 CTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATAC 19622 | | ||||| || || || ||||| || | |||||| | |||||||| || | || Sbjct 298 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACAC 239 Query 19623 TTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGC 19682 ||||||||| || |||||||||||||||| || | || |||||||| ||||||||||| Sbjct 238 TTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGC 179 Query 19683 TCATAACTTCCCACTTGA 19700 ||| |||||||| || || Sbjct 178 TCACAACTTCCCTCTAGA 161 >seq1 Length=68435666 Score = 111 bits (122), Expect = 4e-20 Identities = 185/266 (70%), Gaps = 1/266 (0%) Strand=Plus/Plus Query 19435 TATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTC 19494 |||||||| || | || ||| | || | ||||||||| | || |||||||| Sbjct 3686464 TATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATTTC 3686523 Query 19495 TTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATG 19554 || ||||||| ||||||||| || | || ||||| | || | | | || || ||| Sbjct 3686524 TTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTATG 3686583 Query 19555 GCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTC 19614 | || ||| | |||| || || || ||||| || | ||||| | || |||| Sbjct 3686584 ACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTGTT 3686642 Query 19615 ATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAA 19674 || |||||||| |||| || ||||| | ||||| || || | || |||||||| ||| Sbjct 3686643 ATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGAA 3686702 Query 19675 CGTAATGCTCATAACTTCCCACTTGA 19700 ||||||||||| |||||| | || || Sbjct 3686703 CGTAATGCTCACAACTTCTCTCTAGA 3686728 Score = 93.3 bits (102), Expect = 1e-14 Identities = 205/306 (67%), Gaps = 1/306 (0%) Strand=Plus/Plus Query 19396 CAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTC 19455 |||| ||| || ||| |||| ||||| | ||| ||||| | ||||| | |||| | Sbjct 30150057 CAAGTAGACGAAACTCATAATATTGTAGGTGCCCATGGTTTATTTGGCAGATTTATCTCA 30150116 Query 19456 CAGTACGCATCCTTCAACAATAGCCGTTCTCTA-CATTTCTTTTTGGCTGCTTGGCCTGT 19514 | || || ||||||||| |||| || ||||| |||||||||||||||| || Sbjct 30150117 CGATATGCTAGTTTCAACAATTCTTGTTCCTTAACATTTATTTTTGGCTGCTTGGCTTGC 30150176 Query 19515 GGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTT 19574 || || || | ||| | || | | | || || ||| | || ||| | ||||| || Sbjct 30150177 AGTCGGTATCTAGTTACCTGCTTTACGTATCAGTACTATGACTTTTAACCTAAATGGTTT 30150236 Query 19575 TAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACAT 19634 || | ||||| | | | ||||| | ||| ||| ||| | | | |||| || Sbjct 30150237 CAATTCCAACCAAACTAATGTAGACAATCAGGGTTATGTTATTACCATCTAGACTGATAT 30150296 Query 19635 TCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCC 19694 |||||| || ||| | | | || |||||| | ||| |||||||||| |||||||| Sbjct 30150297 CATCAATCATGGTAAGTTTGATATGGAAGTAATGTATGAATGTAATGCTCACAACTTCCC 30150356 Query 19695 ACTTGA 19700 || || Sbjct 30150357 TCTAGA 30150362 >seq4 Length=57251647 Score = 80.6 bits (88), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 19206 TGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTT 19265 || ||| |||||||| || |||||||||||| ||||| |||| ||| ||| | | || Sbjct 12483537 TGATACTTTCAACTAGAT---TGTATTCCAGGCAGAACACAACAGCCTTATGAATCAATT 12483593 Query 19266 CCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTC 19325 |||||| | | ||| || |||| |||| | || ||||||||||| ||||| | ||| Sbjct 12483594 TCACATGTTGGATGTAACTAGTGTTTTCGATGACTCCCTATTTAGTGCTATGCATGTTTC 12483653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141081652075338