Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq12 93.3 4e-14 seq17 86.0 6e-12 >seq12 Length=28800575 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | |||||||| | | || || ||||||||||||||||| || || Sbjct 14046597 ACGAAGGCGGAGGACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGTGT 14046538 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||||||||| | | |||| |||||||| |||||||| || ||||| Sbjct 14046537 GCGCCCATCCTCCAGCTGTTTACCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATGCC 14046478 Query 132022 TTCTTTATC 132030 || ||||| Sbjct 14046477 CTCCTTATC 14046469 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | |||||||| | | || || ||||||||||||||||| || || Sbjct 14035557 ACGAAGGCGGAGGACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGCGT 14035498 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||||||||| | | |||| || ||||| |||||||| || ||||| Sbjct 14035497 GCGCCCATCCTCCAGCTGTTTACCAGCAAAGATAAGCCGCTGCTGATCTGGTGGGATGCC 14035438 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || ||||| ||||| || | | || | || || | ||| || |||| Sbjct 14035437 CTCCTTATCCTGGATTTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCGAG 14035378 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||| || || |||| || ||||||||| Sbjct 14035377 GGTGATGGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCATG 14035335 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | |||||||| | | || || ||||||||||||||||| || || Sbjct 14079134 ACGAAGGCGGAGGACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAACGT 14079075 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || | ||||||||| | | |||| |||||||| ||||| || || ||||| Sbjct 14079074 GCGCCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGGTGGGATGCC 14079015 Query 132022 TTCTTTATC 132030 || ||||| Sbjct 14079014 CTCCTTATC 14079006 >seq17 Length=6372654 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||| | ||| || ||| |||||||| || |||| Sbjct 622379 GACTCCTTCTGAATGTTGTAGTCGGCGAGGGTCCGGCCATCCTCGAGCTGCTTTCCGGCG 622320 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| |||||||| || ||||| || || || || || || | Sbjct 622319 AAGATGAGGCGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 622260 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | |||||| |||| || | || || || || || ||||| Sbjct 622259 TTCTCGATTGTGTCGGAAGACTCCACCTCGAGGGTGATTGTCTTCCCCGTGAGGGTTTTC 622200 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 622199 ACGAAGATCTGCATG 622185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476372530983960