Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 361 8e-94 seq67 354 1e-91 seq14 127 3e-23 seq5 113 6e-19 seq92 100 4e-15 >seq3 Length=60060032 Score = 361 bits (400), Expect = 8e-94 Identities = 433/581 (75%), Gaps = 14/581 (2%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| | |||||| |||||||||||||||||| | | | ||||| |||||| || Sbjct 42480383 AACCCCGATCGCTTTTCGATGTTCCCCATCCGCTACCCTCCGGTGTGGGAGATGTAC-AA 42480325 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCA 1455853 ||||||| |||||||| |||||||||||||||||||| ||| | ||| ||| Sbjct 42480324 GAAGGCCGTCGCCTCCTTCTGGACCGCCGAGGAGGTCGATCTCTCCAGCGATCTCCCCCA 42480265 Query 1455854 CTGGGTGT---CGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTT 1455910 |||| | | || | | |||||||||||| |||||| ||| |||||||||| || Sbjct 42480264 CTGGCTCCACACCCTCACCACCGACGAGCGCCACTTCATCTCCCACATCCTCGCCTTCTT 42480205 Query 1455911 TCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCC 1455970 ||||||| ||| |||||||| ||||||||| |||| |||||| ||| || |||| Sbjct 42480204 -CGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGTCCGCTTCATGTCCGACGTCC 42480146 Query 1455971 AATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTG 1456030 | | || ||||| || || ||||| ||||| ||||||||||| ||||| ||||| | Sbjct 42480145 AGATCCCCGAGGCTCGCGCCTTCTACGGCTTCCAAATCGCCATCGAGAACATTCACTCCG 42480086 Query 1456031 AAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCT 1456090 | | ||||| ||||| |||| ||||| ||||||| |||| ||| || || | ||| | Sbjct 42480085 AGATGTACTCCCTCCTCCTCGAATCCTACATCAAGGATCCGGACGAAAAAGATCGCCTTT 42480026 Query 1456091 TTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA 1456150 |||||||| |||| || || ||| |||||| || |||||| | ||||| | ||||| Sbjct 42480025 TTCGCGCCGTCGAGACCGTCCCGGCGGTGACAAAGAAGGCCCAATGGGCCCTCCGGTGGA 42479966 Query 1456151 TCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGG 1456208 || ||| | ||| |||| |||||||| ||||| | ||||||| ||| |||| Sbjct 42479965 TC------GAGTCCTCCGAGTCTTTCGCCGAGCGCCTCGTTGCATTTGCCGCCGTTGAGG 42479912 Query 1456209 GCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGC 1456268 | ||||| ||||| ||| |||||| ||||||| |||||||||||||| || ||||||| Sbjct 42479911 GGATCTTCTTCTCTGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGC 42479852 Query 1456269 CCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 | || | || ||| |||||| | ||| ||||||||| Sbjct 42479851 CGGGGC-TCACCTTCTCCAACGAGCTCATCTCTCGCGACGA 42479812 Score = 104 bits (114), Expect = 3e-16 Identities = 198/288 (69%), Gaps = 3/288 (1%) Strand=Plus/Minus Query 1456454 CACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACGTG 1456513 ||||| ||||| ||||| || |||||| | | ||| | ||||| ||| ||| Sbjct 42479804 CACTGCGACTTCGCCTGCCTCCTCTACTCCCTCCTCAACCGCAAGCTCTCGGAGGACCGC 42479745 Query 1456514 CCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTG 1456573 |||| |||||||| ||| || || || || |||| ||||| || |||| ||||| Sbjct 42479744 ATCAAGTCGATCATCGCCGACGCTGTGGACATTGAGAGGGAGTTCGTTTGCGACGCGCTG 42479685 Query 1456574 CCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCG 1456633 ||||||||||| | || ||||||| | ||| |||||||||||| | || || | Sbjct 42479684 CCGGTGGCGCTGGTGGGGATGAACG-GGGATTTGATGAGCCAGTACATTG-AGTTCGTGG 42479627 Query 1456634 CCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTC 1456693 | || || || | ||| | || || ||| ||| ||| || ||| || || ||| Sbjct 42479626 CGGATCGGCTCTTGTTGGCTTTGGGATGTGGA-AAGTTGTACGGGGTGGCGAATCCATTC 42479568 Query 1456694 CCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||||||||| |||| || || | || ||||| || || |||||| Sbjct 42479567 GACTGGATGGAGCTGATATCACTTCAAGGGAAGACTAATTTCTTCGAG 42479520 >seq67 Length=1088699 Score = 354 bits (392), Expect = 1e-91 Identities = 402/530 (76%), Gaps = 17/530 (3%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||||||||| |||| | | | ||||| |||||| || ||||||| |||||||| Sbjct 292548 TGTTCCCCATCCGGTACCCCCAGGTGTGGGAGATGTAC-AAGAAGGCCGTCGCCTCCTTC 292490 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGT---CGCTGAGC 1455869 |||||||||||||||||||||||| ||||||| ||||||| | | || | | Sbjct 292489 TGGACCGCCGAGGAGGTCGACCTCTCCGCCGACCTCCCCCACTGGCTCCACACCCTCACC 292430 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 |||||||||||| |||||| |||||||| || ||| ||||||||| ||| ||||| Sbjct 292429 CCCGACGAGCGCCACTTCATCTCCCACGTCCTTGC-TTTCTTCGCCGCCTCCGACGGCAT 292371 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA-ATTGCCAGAGGCACGTT 1455988 ||| ||||||||| |||| |||||| ||| || ||||| |||||| ||||| || Sbjct 292370 CGTCCTCGAGAACCTCGCCGCCCGCTTCATGTCCGACGTCCAGATTGCC-GAGGCTCGCG 292312 Query 1455989 TGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGA 1456048 || ||||| |||||||| |||||||||||||||||||| || | || || || || Sbjct 292311 CCTTCTACGGCTTCCAGATAGCCATCGAAAACATCCACTCCGAGATGTATTCTCTTTTGC 292252 Query 1456049 TCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGG 1456108 | || ||||| |||| ||||| | ||| || |||| ||| ||||| || |||| |||| Sbjct 292251 TGGAATCCTACATCAAAGACCCTGACGAAAAAGACCGCCTTTTTCGTGCTGTCGAGACGG 292192 Query 1456109 TGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC- 1456167 | ||| ||||| ||| |||||| | |||||| | ||||||| | | |||| Sbjct 292191 TCCCGGCGGTGGCGAAGAAGGCCCAGTGGGCGCTCCAGTGGATTGA-------GTCCTCG 292139 Query 1456168 GAC-ACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGC 1456225 ||| ||| || ||||| ||||| | ||| | || || ||||| ||||| ||||| ||| Sbjct 292138 GACTCCTTCGCGGAGCGCCTCGTGGCCTTCTCTGCTGTTGAGGGGATCTTCTTCTCCGGC 292079 Query 1456226 AGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||| ||||||| |||||||||||||||||||||||||| || || Sbjct 292078 TCCTTCTGTTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCT 292029 Score = 132 bits (146), Expect = 7e-25 Identities = 208/291 (71%), Gaps = 9/291 (3%) Strand=Plus/Minus Query 1456454 CACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACGTG 1456513 ||||| ||||| ||||| || |||||| | | ||| | |||||| || | || | Sbjct 291988 CACTGCGACTTCGCCTGCCTCCTCTACTCCCTCCTCAACCACAAGC--TCC-CTGAGGAT 291932 Query 1456514 CCCAAGCAG---ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCG 1456570 | || || ||||||| ||| || ||||| ||||||| ||||| ||| |||| || Sbjct 291931 CGCATCAAGTCAATCATCGCCGACGCTGTCGACATCGAGAGGGAGTTCGTCTGCGATGCG 291872 Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTG 1456630 ||||||||||||| | || ||||| | | ||| || | ||||| || || | Sbjct 291871 TTGCCGGTGGCGCTGGTGGGGATGAATGGGGATT-TGATGAGCGAATACATCGAGTTC-G 291814 Query 1456631 TCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCG 1456690 | || || || || | | |||| | || ||||| |||| ||| || | ||||| ||| Sbjct 291813 TGGCGGATCGGCTCTTGGGGGCGTTGGGGTGCGG-GAAGTTGTACGGGGCAGCCAATCCG 291755 Query 1456691 TTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||| |||||||||||||| |||||| |||| ||||| |||||||||||| Sbjct 291754 TTCGATTGGATGGAGTTGATATCGCTCCAGGGGAAGACGAACTTTTTCGAG 291704 >seq14 Length=24379743 Score = 127 bits (140), Expect = 3e-23 Identities = 170/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| || |||||||| ||||| || | | ||| ||| || | |||| || Sbjct 1079780 ATCTTCAAGGTCCTGAAGCAGGTCCACCCG-GA--CATCGGG--ATC-TCGAGCAAGGCC 1079833 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||||| |||| ||| | |||||| Sbjct 1079834 ATGGGCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCCTCC 1079893 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || || | ||||||| ||| ||| | | || |||||||||||| |||| Sbjct 1079894 CGTCTTGCCCGTTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTC 1079953 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | |||||| || |||| ||||||||||||||||||||||| Sbjct 1079954 CGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCA 1080005 Score = 100 bits (110), Expect = 4e-15 Identities = 169/238 (71%), Gaps = 10/238 (4%) Strand=Plus/Plus Query 724907 CTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAA 724966 || ||||| ||||| || |||||||| ||||| || | | ||| ||| || | ||| Sbjct 1165248 CTATATCTTTAAGGTCCTGAAGCAGGTCCACCCG-GA--CATCGGG--ATC-TCGAGCAA 1165301 Query 724967 GTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGC 725026 | ||||| ||||||||||| || |||||||||| |||| ||| | ||||| Sbjct 1165302 GGCCATGGGCATCATGAACTCTTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGC 1165361 Query 725027 CGGTC--GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 ||| | || || |||| ||||||| || || | | || ||||| |||||| Sbjct 1165362 --GTCCAGGCTTGCCCGCTACAACAAGAAGCCTACCATTACCTCCCGGGAGATTCAGACC 1165419 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || |||||| || | | |||||| || || | |||||||||||| |||||||||| Sbjct 1165420 TCTGTCCGCCTGGTCCTCCCCGGCGAGCTTGCGAAGCACGCCGTCTCGGAGGGCACCA 1165477 >seq5 Length=51955539 Score = 113 bits (124), Expect = 6e-19 Identities = 169/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||| | |||||||| ||||| || | | ||| ||| |||| |||| | Sbjct 2029839 ATCTTCAAGGTGTTGAAGCAGGTCCACCCG-GA--CATCGGG--ATC-TCCAGCAAGGCT 2029786 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||| || || ||||||| || | || ||| | ||||| | Sbjct 2029785 ATGGGCATCATGAATTCCTTCATCAACGATATCTTTGAGAAGCTCGCCCAGGAGGCTTCT 2029726 Query 725031 CGCCTGGCGCGCTCCAACAAGC-GCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||||| || |||| ||||||| || | || ||| | | || ||||| |||||| |||| Sbjct 2029725 CGCCTCGCCCGCTACAACAAGAAGCCA-ACCATCACCTCCCGGGAGATTCAGACCTCCGT 2029667 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | |||||| || |||| |||||||||||||||||| |||| Sbjct 2029666 CCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGTACCA 2029614 Score = 104 bits (114), Expect = 3e-16 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||| | |||||||| || || || | | || |||| |||| |||| || Sbjct 2104864 ATCTTCAAGGTGTTGAAGCAGGTCCATCCG-GA--CATCGG--CATC-TCCAGCAAGGCC 2104811 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||||| | || ||| | ||||| Sbjct 2104810 ATGGGCATCATGAACTCCTTCATCAACGACATCTTTGAGAAGCTCGCCCAGGAGGCGTCC 2104751 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| |||| |||| ||||||| || ||| | | || |||||||||||| |||| Sbjct 2104750 CGCTTGGCCCGCTACAACAAGAAGCCGACCATCACCTCCCGGGAGATCCAGACCTCCGTT 2104691 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | ||||| || || | |||||||||||| ||||| |||| Sbjct 2104690 CGCCTCGTCCTCCCTGGCGAGCTAGCTAAGCACGCCGTCTCGGAGGGTACCA 2104639 Score = 96.9 bits (106), Expect = 5e-14 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| | |||||||| ||||| | || |||| || | |||| || Sbjct 47963295 ATCTTCAAGGTCTTGAAGCAGGTCCACCCGGATATCGG-----CATC-TCGAGCAAGGCC 47963348 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||||| |||| ||| | ||||| Sbjct 47963349 ATGGGTATCATGAACTCCTTCATCAACGACATCTTCGAGAAACTCGCCCAAGAGGCTTCC 47963408 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || |||| ||||||| || ||| | | || ||||||||||| |||| Sbjct 47963409 CGTCTCGCCCGCTACAACAAGAAGCCGACCATCACCTCTCGTGAGATCCAGACGTCCGTC 47963468 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | | | ||||||||| || | ||||||||||||||||||||| Sbjct 47963469 CGTCTCGTTCTCCCCGGCGAACTCGCGAAGCACGCCGTCTCCGAGGGCAC 47963518 >seq92 Length=1050583 Score = 100 bits (110), Expect = 4e-15 Identities = 161/224 (72%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 ||| | |||||||| ||||| || | | ||| ||| || | |||| ||||| ||| Sbjct 971856 GTGTTGAAGCAGGTCCACCCG-GA--CATCGGG--ATC-TCGAGCAAGGCCATGGGCATC 971909 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCGGTCGCCTGGC 725038 |||||||| || |||||||||| |||| ||| ||| ||||| | || || Sbjct 971910 ATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCGCAG-GAGGCTTCCAGGCTCGC 971968 Query 725039 GCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGAT 725098 || | ||||||| || ||| | | || |||||||||||| |||| ||||| | Sbjct 971969 TCGATACAACAAGAAGCCGACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGT 972028 Query 725099 CATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | | |||||| || |||| ||||||||||||||||||||||| Sbjct 972029 CCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCA 972072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7173947242917882