Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq40061 630 8e-176 seq14 188 8e-43 seq1 170 2e-37 seq4 86.0 7e-12 >seq40061 Length=156973 Score = 630 bits (698), Expect = 8e-176 Identities = 737/990 (74%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 159960 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 160019 |||||| | ||| |||| || | ||||| || || | || |||||||| || || Sbjct 1137 TTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1078 Query 160020 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 160078 ||||| || || | ||| | ||||| ||||| ||||| |||||||| | |||||||| Sbjct 1077 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTCATTATCGCCTTCATTGCTGCTCC 1019 Query 160079 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 160138 || || || || || || || |||||||| || ||||||| || | ||||| ||||| Sbjct 1018 TCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAA 959 Query 160139 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160198 || ||||||||||| || |||| |||| || || ||| | || || ||||| || Sbjct 958 TATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGAT 899 Query 160199 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 160258 |||||||| ||||| ||||||||||| | || || || ||||||| | || | || Sbjct 898 ATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 839 Query 160259 ATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 160318 | |||||| | | || | | || ||||| ||||||||||||||| | ||| Sbjct 838 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 779 Query 160319 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 160378 | |||||||| || ||||| ||| |||||||| ||||| || || || || |||| Sbjct 778 CCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 719 Query 160379 TGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160438 ||| ||| | | || ||| | |||||||| |||||| |||| ||||||| | || || Sbjct 718 TGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 659 Query 160439 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160498 ||||||||||| |||| |||| |||||||||| || |||||||| |||||||||||||| Sbjct 658 ATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATCC 599 Query 160499 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 160558 || |||||| | || || ||||| |||||||| || || | ||| ||||||||| || Sbjct 598 ATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 539 Query 160559 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACG 160617 | || || || | | | || | ||||| ||||||| || || || | Sbjct 538 TTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGG 480 Query 160618 GTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCG 160677 |||| | ||||||||||||||||| || || || ||||| || || |||||||| || | Sbjct 479 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 420 Query 160678 GTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGG 160737 | || ||||||||||||||||| |||||||| || ||||| | || |||||| ||| Sbjct 419 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGG 360 Query 160738 CAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCA 160797 | || ||||||||||| || ||||||||||||||| | ||| |||| || ||||| |||| Sbjct 359 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 300 Query 160798 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACA 160857 |||| || |||||||| |||||||| || | | || |||| |||||||| | |||| Sbjct 299 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACA 240 Query 160858 CCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 160917 | ||||| || | | ||||||||| |||||||||||||| |||||||| ||||| | Sbjct 239 CTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATG 180 Query 160918 CACACAACTTCCCACTCGACCTCGCTGCTG 160947 | ||||||||||| || ||||| ||||||| Sbjct 179 CTCACAACTTCCCTCTAGACCTAGCTGCTG 150 Score = 545 bits (604), Expect = 3e-150 Identities = 724/995 (73%), Gaps = 10/995 (1%) Strand=Plus/Plus Query 161716 GGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTG 161775 |||| |||||||||||||| ||||||||||| || | || |||| ||||||| | | Sbjct 33104 GGGACCGTTTCGTTTTTGTAGGCTGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCG 33163 Query 161776 CTATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGGTATACCCATGGTCTCG 161835 || | || |||||| |||| || |||||||| | ||| |||||||||||||| | | Sbjct 33164 CTTTAGGAGGTTGGTTTACAGGTACAACTTTTGTAACTTCATGGTATACCCATGGATTGG 33223 Query 161836 CTAGTTCCTATCTTGAGGGT-GCAAACTTTCTT-ACAGCGTCAGTTAGCACTCCAGCTGA 161893 | ||||||||| | || ||| |||| |||||| || || ||||| |||||| || | Sbjct 33224 CCAGTTCCTATTTGGAAGGTTGCAA--TTTCTTGACCGCTGCAGTTTCCACTCCTGCGAA 33281 Query 161894 CGCTATGGGTCATTCTCTTCTT-CTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCC 161952 | | | ||||| ||| || || || ||||| |||||||| ||||||||||| | Sbjct 33282 TAGTTTAGCACATTC-CTTGTTGCTACTATGGGGCCCTGAGGCACAAGGGGATTTTACTC 33340 Query 161953 GCTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAA 162012 | ||| ||| | || || || |||| |||||| || |||||||||| |||| |||| Sbjct 33341 GTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGTTTTCGGACTAA 33400 Query 162013 TTGGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTTATTGGTATC-CGTCCCTACAA 162070 | || || ||| | ||||| || ||||| || || ||| || || || || || || Sbjct 33401 TAGGTTTTATGTTACGTCAATTCGAACTTGCTCGATCTG--TGCAATTGCGACCTTATAA 33458 Query 162071 TGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATT 162130 ||| || || ||||||| ||| |||||||||||||| || ||||| || || ||| | Sbjct 33459 TGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACT 33518 Query 162131 GGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCT 162190 |||||| || ||||||| || || || ||||| || ||||| || ||| ||||| | Sbjct 33519 GGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGCGTAGCAGCTATATTTCGATTCAT 33578 Query 162191 GTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGC 162250 | || | ||||| || ||||| ||||| ||||||| || ||||||||||||||||| Sbjct 33579 CCTCTTCTTCCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGC 33638 Query 162251 TGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATT 162310 || || |||| | || || |||| |||||||| || | || || |||||||| || Sbjct 33639 CGGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTT 33698 Query 162311 ATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGA 162370 || ||| ||||| || ||||| || || || ||| | | || || | ||||| Sbjct 33699 ATTCGAAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGA 33758 Query 162371 GACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTC 162430 ||||||||| ||||||||||| |||||||| ||||| || ||||| || |||| ||||| Sbjct 33759 GACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTC 33818 Query 162431 TAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATC 162490 || || || ||| | ||||| || ||| | ||||| || || | ||| |||||| Sbjct 33819 CAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGGTTTATGGATGAG 33878 Query 162491 CTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGA 162550 || |||| | | || || ||||| ||||| ||||| || || ||||| || || Sbjct 33879 TGCTCTTGGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCGTTTCCCAAGA 33938 Query 162551 GATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAA 162610 ||| | ||||| ||||||||||| ||||| || |||||||| || || || || | || Sbjct 33939 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTCTTAAA 33998 Query 162611 TGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCC 162670 ||||| | ||||| ||| | || || || || || ||||| ||| |||| ||||| Sbjct 33999 CGAAGGTATTCGTGCTTGGATGGCGGCTCAGGATCAGCCTCATGAAAACCTTATATTCCC 34058 Query 162671 AGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 || || ||||| || | || ||||| ||||||| Sbjct 34059 TGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 34093 >seq14 Length=24379743 Score = 188 bits (208), Expect = 8e-43 Identities = 248/344 (72%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 162072 GCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTG 162131 || ||||| ||||||| ||| |||||||||||||| | ||||| || || |||||| Sbjct 16929123 GCAATTGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTATATTCCTGATTTATCCATTG 16929182 Query 162132 GGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTG 162191 |||| || ||||||| || || || ||||| || ||| | || ||| |||| | Sbjct 16929183 GGTCGATCTGGTTGGTTCTTTGCGCCCAATTTTGGTGTAGCAACTATATTTCTATTCATC 16929242 Query 162192 TTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCT 162251 | ||| | ||| | || |||| ||||| ||||||| || |||||||||||||||||| Sbjct 16929243 CTTTTTTTCCAAAGGTTTTATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCT 16929302 Query 162252 GGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTA 162311 || || |||| | || || |||| |||||||| || | || || ||||||| ||| Sbjct 16929303 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATATTTTA 16929362 Query 162312 TACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAG 162371 | ||| ||||| || ||||| || || | || ||| | | || || | |||||| Sbjct 16929363 TTCGAAGATGGTGACGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAG 16929422 Query 162372 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 162415 |||||| ||||||||| | || ||| ||||| || ||||| Sbjct 16929423 ACTTATGTAATGGTCACTACTCACTACTTTTGGTCCCAAATCTT 16929466 >seq1 Length=68435666 Score = 170 bits (188), Expect = 2e-37 Identities = 206/279 (74%), Gaps = 1/279 (0%) Strand=Plus/Plus Query 160669 GTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACT 160728 |||| || || || ||||||||| ||||| | |||||||| || | || | || | Sbjct 3686462 GTTATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATT 3686521 Query 160729 TCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCA 160788 ||||| |||| | ||||||||||| | ||||||||||||||| | || |||| || | Sbjct 3686522 TCTTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTA 3686581 Query 160789 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTG 160848 || | || ||||| || | |||||| |||||||| || | | || |||| || ||| Sbjct 3686582 TGACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTG 3686640 Query 160849 TACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATG 160908 | | || || ||| | || | | ||| | ||| ||||||||||||||| ||||||| Sbjct 3686641 TTATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATG 3686700 Query 160909 AGCGTAACGCACACAACTTCCCACTCGACCTCGCTGCTG 160947 | ||||| || ||||||||| | || ||||| ||||||| Sbjct 3686701 AACGTAATGCTCACAACTTCTCTCTAGACCTAGCTGCTG 3686739 Score = 116 bits (128), Expect = 4e-21 Identities = 239/353 (68%), Gaps = 3/353 (1%) Strand=Plus/Plus Query 160587 GAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACC 160646 ||||| ||| ||| ||||| || | ||||| | ||| |||||| || || || Sbjct 30150012 GAAACCACTAAAAATGAGTCTACTAATGAAGGTTACAGATTCAGTCAAGTAGACGAAACT 30150071 Query 160647 TACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTC 160706 | || || || | |||||||||| || || | || |||| | |||||| ||| Sbjct 30150072 CATAATATTGTAGGTGCCCATGGTTTATTTGGCAGATTTATCTCACGATATGCTAGTTTC 30150131 Query 160707 AACAACTCCCGTTCACTTCAC--TTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGT 160764 ||||| || |||| ||| || || || |||| || |||| || |||||| |||| || Sbjct 30150132 AACAATTCTTGTTC-CTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTCGGTATCTAGT 30150190 Query 160765 TCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGT 160824 | ||||| | || | || || ||| | || ||||| || |||||||| | |||||| Sbjct 30150191 TACCTGCTTTACGTATCAGTACTATGACTTTTAACCTAAATGGTTTCAATTCCAACCAAA 30150250 Query 160825 CCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTG 160884 | | | || ||| ||| ||| | | || || | | || | | |||| || | Sbjct 30150251 CTAATGTAGACAATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTA 30150310 Query 160885 GTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAC 160937 ||| ||||||||| ||| |||| |||| || ||||||||||| || ||| Sbjct 30150311 AGTTTGATATGGAAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGAC 30150363 >seq4 Length=57251647 Score = 86.0 bits (94), Expect = 7e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 162300 GAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACA 162359 |||||||| |||| ||| ||||| || ||||| || || || ||| | | || Sbjct 3793182 GAAAATACTTTATTCGAAGATGGTGACGGTGCAAATACGTTCCGTGCTTTTAACCCAACT 3793241 Query 162360 CAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGT 162419 || | |||||||||||||| ||||||||||| |||| ||| ||||| || ||||| || Sbjct 3793242 CAAGCTGAAGAGACTTATTCAATGGTCACTGCTAACCACTTTTGGTCCCAAATCTTTGGG 3793301 Query 162420 ATTGCGTTTT 162429 |||| |||| Sbjct 3793302 GTTGCTTTTT 3793311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559223821378200