Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq40061 581 5e-161 seq14 163 4e-35 seq1 134 2e-26 seq1239 95.1 2e-14 >seq40061 Length=156973 Score = 581 bits (644), Expect = 5e-161 Identities = 701/951 (74%), Gaps = 2/951 (0%) Strand=Plus/Minus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || ||||||||| | || |||||||||||| | ||||| ||||| || || |||||||| Sbjct 1110 AACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1051 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| ||||||||||| ||| | | |||||| ||||| || || || || || ||||| Sbjct 1050 -TCTGTATTCATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 992 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 |||||| ||||||| || | ||||||||||| || ||||||||||| || |||| | Sbjct 991 ACCAGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCGAC 932 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 ||| || |||||| | || || || || || |||||||| || | | || || || Sbjct 931 TTCTGCAGCTATCGGTTTGCATTTTTATCCGATATGGGAAGCGGCATCTGTTGATGAGTG 872 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793 | | ||||| || ||||||| | ||| |||| | |||||| | ||||| | Sbjct 871 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 812 Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGT 174853 || ||||| |||||||||||||| || || | |||||| | |||||||| ||| Sbjct 811 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGCCTGGGTATGCGTCCTTGGATTGCTGT 752 Query 174854 AGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCA 174913 ||||| || || || |||||||| ||| | || || ||| | |||| ||| | ||||| Sbjct 751 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 692 Query 174914 AGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGT 174973 ||| ||||| || | ||||| || || || ||||| || ||||||| |||| | || Sbjct 691 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGT 632 Query 174974 CTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGT 175033 ||||| || ||||| |||||| | ||||| || || ||||||||||| || || ||||| Sbjct 631 ATTCCAGGCGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGT 572 Query 175034 CTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCG 175093 ||||| || || | ||| || ||||||||||| | || |||||| | || | Sbjct 571 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 512 Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153 || || ||||||| || || || ||||||| ||||| ||||| ||||| || Sbjct 511 GGAAACCACTGAAAACGAATCTGCTAATGCGGGTTACAGATTCGGTCAAGAGGAAGAAAC 452 Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213 ||||| ||||| || || ||||| || || || || |||||||||||||| ||| || Sbjct 451 TTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 392 Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTT 175273 |||||| || || || | || |||||||| || || ||||| || || ||||||||||| Sbjct 391 CAACAATTCTCGTTCCTTACATTTCTTCTTGGCTGCTTGGCCTGTAGTAGGTATCTGGTT 332 Query 175274 CACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTC 175333 ||| || | ||| || || ||||| |||||||| ||||||||||| |||||||| || Sbjct 331 CACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 272 Query 175334 TGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGG 175393 ||| | ||| | || ||| | || | ||||| ||||| ||| | | || | ||| Sbjct 271 TGTAGTTGACAGTCAGGGTCGTGTTATCAACACTTGGGCTGATATCATCAATCGTGCTAA 212 Query 175394 TCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGA 175444 ||||| ||||||||||||||||| | ||||| ||||||||||| ||||| Sbjct 211 CCTTGGTATGGAAGTAATGCATGAACGTAATGCTCACAACTTCCCTCTAGA 161 Score = 470 bits (520), Expect = 2e-127 Identities = 719/1013 (71%), Gaps = 10/1013 (1%) Strand=Plus/Plus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| || ||| | | || || | || | ||| | ||||||||||| | Sbjct 33078 TGATATTATGGATGATTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCTGGCCT 33137 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||||||| | || | || || ||| |||| || ||||||||||| Sbjct 33138 ATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGTACAACTTTTGT 33197 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032 || ||||| |||||||| | || ||||||| | || ||| || || | || Sbjct 33198 AACTTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAATTTCTTGAC 33257 Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTT-CTACTTTGGGGTC 176091 || || || || |||||||| || | | | ||||| ||| || ||||| ||||| | Sbjct 33258 CGCTGCAGTTTCCACTCCTGCGAATAGTTTAGCACATTC-CTTGTTGCTACTATGGGGCC 33316 Query 176092 CTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTG 176151 |||| | || || || || || ||| ||| | || || || ||| | ||||||| Sbjct 33317 CTGAGGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTG 33376 Query 176152 CTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGAC 176211 ||||||| |||| |||| || || || || ||| | ||||| || ||||| || || Sbjct 33377 CTCTCCATGGTGTTTTCGGACTAATAGGTTTTATGTTACGTCAATTCGAACTTGCTCGA- 33435 Query 176212 TCATTGGTATC-CGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTC 176270 || || || || || || || || || |||||| || ||| || ||||| ||||| Sbjct 33436 TCTGTGCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTT 33495 Query 176271 AGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGT 176330 ||| || || | || ||||| ||||||||| ||||||||||| ||| ||||| Sbjct 33496 TCTGTATTCCTGATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGC 33555 Query 176331 GTGGCAGCAATCTTTAGATTCCTATTGTTTCTTC--AGGGTTTCCACAACTGGACACTGA 176388 || ||||| || ||| ||||| | | |||||| ||||||| || || ||||| ||| Sbjct 33556 GTAGCAGCTATATTTCGATTCATCCT-CTTCTTCCAAGGGTTT-CATAATTGGACGTTGA 33613 Query 176389 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCC 176448 |||| || ||||||||||||||||| || || |||| | || || |||| || || | Sbjct 33614 ACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCTGCTCTGCTATGCGCTATTC 33673 Query 176449 ATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAAC-AACACCTTCACT 176507 |||| | ||| || |||||||| ||| |||||||| | || | | || || ||| | Sbjct 33674 ATGGTGCTACCGTAGAAAATACTTTATTCGAAGATGGTG-ACGGTGCAAATACATTCCGT 33732 Query 176508 GCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGG 176567 || || | | || || | |||||||| ||||| ||||| ||||| |||||||| ||| Sbjct 33733 GCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACCGCTTTTGG 33792 Query 176568 TCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTT 176627 || |||||||| |||||||| ||| ||||| |||||| | || ||||||||| | ||| Sbjct 33793 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 33852 Query 176628 GTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTT 176687 || || || | ||| | ||| | | |||| | | || || ||||| || || Sbjct 33853 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGCCTGGCTCTGAACCTC 33912 Query 176688 CGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACT 176747 ||||| ||||| || || |||||| || | ||||| ||||||||||| ||||| ||| Sbjct 33913 CGTGCCTATGACTTCGTTTCCCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACT 33972 Query 176748 TTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGAT 176807 |||||||| || || ||||| | |||||||| | | || |||||||| || |||| Sbjct 33973 TTCTACACCAAAAATATCCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAGGAT 34032 Query 176808 CAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 || || ||||| || ||||||| || || |||||||| | || ||||| Sbjct 34033 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGC 34085 >seq14 Length=24379743 Score = 163 bits (180), Expect = 4e-35 Identities = 258/366 (70%), Gaps = 3/366 (1%) Strand=Plus/Plus Query 176234 CGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACT 176293 ||| ||||||||| || ||| || ||||| ||||| | | || || | || ||| | Sbjct 16929122 CGCAATTGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTATATTCCTGATTTATCCATT 16929181 Query 176294 AGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCT 176353 |||| |||| ||||||||||| ||| |||||||| ||| | || ||| |||| | Sbjct 16929182 GGGTCGATCTGGTTGGTTCTTTGCGCCCAATTTTGGTGTAGCAACTATATTTCTATTCAT 16929241 Query 176354 ATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGC 176413 | ||| | || | || | || ||||| ||||||| || ||||||||||||||||| Sbjct 16929242 CCTTTTTTTCCAAAGGTTTTATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGC 16929301 Query 176414 TGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCT 176473 ||| || |||| | || || |||| || || ||||| | ||| || ||||||| | Sbjct 16929302 TGGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATATTTT 16929361 Query 176474 ATATGAAGATGGAGAACAGAAC-AACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAG 176532 || |||||||| | || | | || || ||| ||| || | | || || | |||| Sbjct 16929362 ATTCGAAGATGGTG-ACGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAG 16929420 Query 176533 AGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTA 176592 |||| ||| ||||| ||| | || ||| ||||| |||||||| | |||||| |||| Sbjct 16929421 AGACTTATGTAATGGTCACTACTCACTACTTTTGGTCCCAAATCTTTGAGGTTGC-TTTA 16929479 Query 176593 GTAATA 176598 || || Sbjct 16929480 ATATTA 16929485 >seq1 Length=68435666 Score = 134 bits (148), Expect = 2e-26 Identities = 190/266 (71%), Gaps = 1/266 (0%) Strand=Plus/Plus Query 175179 TACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTC 175238 || || || || ||||||||| |||| || |||||||| || | | | || ||| Sbjct 3686464 TATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATTTC 3686523 Query 175239 TTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATG 175298 ||||| || | ||||| || || ||||||||||||| || | || || || ||| Sbjct 3686524 TTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTATG 3686583 Query 175299 GCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTA 175358 | || ||||| |||| |||||| |||||||| ||||| | ||| | || || | || Sbjct 3686584 ACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTGTT 3686642 Query 175359 TTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAG 175418 | || || ||| | ||| | | || | ||| |||||| ||||||||||||||||| Sbjct 3686643 ATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGAA 3686702 Query 175419 AGAAATGCACACAACTTCCCACTAGA 175444 | ||||| ||||||||| | ||||| Sbjct 3686703 CGTAATGCTCACAACTTCTCTCTAGA 3686728 >seq1239 Length=80461 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/227 (71%), Gaps = 11/227 (5%) Strand=Plus/Plus Query 176229 TACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTC-TATA 176287 || || || || |||||| || ||| || ||| | ||||| || || |||| | || Sbjct 69231 TATAATGCAATCGCATTCTCTGTTCCAATTGCTATTTTTGTTTCCGTATT-CTTCATTTA 69289 Query 176288 CCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAG 176347 ||||| ||||||||| ||||||||||| ||| ||||| ||||| || ||| | Sbjct 69290 TCCACTGGGTCAATCTAGTTGGTTCTTTGCACCC-----AGGTGTTGCAGCTATATTTTG 69344 Query 176348 ATTCCTATTGTTTCTTC--AGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATG 176405 |||| | | |||||| ||||||| || || |||| ||||||| || ||| ||| | Sbjct 69345 ATTCATCCT-CTTCTTCCAAGGGTTT-CATAATTGGATGTTGAACCCATTTCATTTGACG 69402 Query 176406 GGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGG 176452 |||||||| || || ||||| || || |||| | || ||||| Sbjct 69403 GGAGTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGG 69449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729564078628680