Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq40061 596 2e-165 seq14 161 1e-34 seq1 118 1e-21 seq4 86.0 8e-12 seq357 82.4 9e-11 >seq40061 Length=156973 Score = 596 bits (660), Expect = 2e-165 Identities = 726/987 (74%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 |||||| | ||| |||| || | ||||| || || | || |||||||| || || Sbjct 1137 TTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1078 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || || | ||| | |||||| ||||| ||||| |||||||| | |||||||| Sbjct 1077 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTCATTATCGCCTTCATTGCTGCTCC 1019 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || || || || || |||||||| || ||||||| || | ||||| ||||| Sbjct 1018 TCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAA 959 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 || ||||||||||| || |||| |||| || || ||| | || || ||||| || Sbjct 958 TATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGAT 899 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| ||||| ||||||||||| | || || || ||||||| | || | || Sbjct 898 ATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 839 Query 178148 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 178207 | |||||| | ||||| | | |||||||| ||||||||||||||| | ||| Sbjct 838 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 779 Query 178208 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGC 178267 | |||||||| || ||||| ||| ||||| || ||||| || ||||| || | || Sbjct 778 CCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 719 Query 178268 AGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCAT 178327 || ||| || |||| ||| | |||||||| || ||||| | ||||| | || || Sbjct 718 TGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 659 Query 178328 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCC 178387 |||||||| ||||||| |||| |||| ||||| || ||||||||||| || ||||| || Sbjct 658 ATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATCC 599 Query 178388 CTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGG 178447 || |||||||||||||| || ||||||||||| || || || |||||||| ||||| || Sbjct 598 ATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 539 Query 178448 TTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGG 178507 ||| ||||| || ||| | | | ||||| ||||||| ||||| || || Sbjct 538 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGGG 479 Query 178508 TTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGG 178567 ||| | ||||| ||||| ||||| || || || ||||| || || ||||| || || || Sbjct 478 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 419 Query 178568 TCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 178627 || |||||||||||||||||| |||||||| || ||||| | || |||||| | || Sbjct 418 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGGC 359 Query 178628 AGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAA 178687 || ||||||||||| || ||||||||||| || | || | || || ||||| || || Sbjct 358 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 299 Query 178688 CCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACAC 178747 ||| ||||| ||||| |||||||| || | | ||| | || || ||||| ||||||| Sbjct 298 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACAC 239 Query 178748 ATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGC 178807 ||||| || | |||| ||||| || || |||||||| ||||| || || || || Sbjct 238 TTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGC 179 Query 178808 GCACAACTTCCCGCTTGATCTTGCAGC 178834 ||||||||||| || || || || || Sbjct 178 TCACAACTTCCCTCTAGACCTAGCTGC 152 Score = 475 bits (526), Expect = 4e-129 Identities = 695/974 (71%), Gaps = 8/974 (1%) Strand=Plus/Plus Query 179251 GGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTG 179310 |||| || || || ||||| || |||||||| || | || |||| ||||||| | | Sbjct 33104 GGGACCGTTTCGTTTTTGTAGGCTGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCG 33163 Query 179311 CCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTG 179370 | | || |||||| |||| || ||| ||||||| || ||||| ||||| || | | Sbjct 33164 CTTTAGGAGGTTGGTTTACAGGTACAACTTTTGTAACTTCATGGTATACCCATGGATTGG 33223 Query 179371 CTAGTTCCTATCTTGAGGGTGCTAACTTTCTT-ACGGCAGCTGTCTCGACGCCTGCTGAT 179429 | ||||||||| | || ||| || |||||| || || || || || || ||||| || Sbjct 33224 CCAGTTCCTATTTGGAAGGTTGCAA-TTTCTTGACCGCTGCAGTTTCCACTCCTGCGAAT 33282 Query 179430 GCTATGGGTCATTCTCTTCTT-CTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCG 179488 | | | ||||| ||| || ||||| ||||| |||||| | || ||| |||| || Sbjct 33283 AGTTTAGCACATTC-CTTGTTGCTACTATGGGGCCCTGAGGCACAAGGGGATTTTACTCG 33341 Query 179489 GTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCAT 179548 ||||| ||| | || || || |||| ||| || |||||||| |||| |||| || || Sbjct 33342 TTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGTTTTCGGACTAAT 33401 Query 179549 TGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGTATCA-GACCTTACAAT 179606 ||||| ||| | | ||||| ||||||||||| ||| || || ||||||| ||| Sbjct 33402 AGGTTTTATGTTACGTCAATTCGAACTTGCTCGATCTG--TGCAATTGCGACCTTATAAT 33459 Query 179607 GCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTG 179666 || || || || |||| ||| |||||||| || || ||| ||||| || ||||| || Sbjct 33460 GCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTG 33519 Query 179667 GGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTG 179726 || || || |||||| || ||||| ||||| || || || || || | ||| | Sbjct 33520 GGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGCGTAGCAGCTATATTTCGATTCATC 33579 Query 179727 CTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCT 179786 || ||| | || || || || || |||||| | ||||| || ||||||||||||||||| Sbjct 33580 CTCTTCTTCCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCC 33639 Query 179787 GGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTG 179846 || || |||| | || ||||| | ||||| ||||| | ||| ||||| ||||| || Sbjct 33640 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTA 33699 Query 179847 TATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAG 179906 | |||||||| || |||||||| || || ||| | | || || | |||||| Sbjct 33700 TTCGAAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAG 33759 Query 179907 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCT 179966 |||||||| ||||||||||| |||||||| ||||| || ||||| || |||| ||||| Sbjct 33760 ACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCC 33819 Query 179967 AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCC 180026 || || || ||| | ||||| || ||| | ||||| || || | ||| |||||| Sbjct 33820 AATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGGTTTATGGATGAGT 33879 Query 180027 TCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAG 180086 || |||| | | || || ||||| ||||| ||||| || || ||||| || || Sbjct 33880 GCTCTTGGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCGTTTCCCAAGAA 33939 Query 180087 ATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAAT 180146 ||| | ||||| |||||||| || |||||||| ||||||||||| || || || | || Sbjct 33940 ATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTCTTAAAC 33999 Query 180147 GAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTATTCCCA 180206 ||||| | ||||| ||| |||| | ||||| || ||||| | ||||||| Sbjct 34000 GAAGGTATTCGTGCTTGGATGGCGGCTCAGGATCAGCCTCATGAAAACCTTATATTCCCT 34059 Query 180207 GAAGAAGTTCTGCC 180220 || || ||||| || Sbjct 34060 GAGGAGGTTCTACC 34073 >seq14 Length=24379743 Score = 161 bits (178), Expect = 1e-34 Identities = 242/344 (70%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 179607 GCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTG 179666 || ||||| || |||| ||| |||||||| || || | | ||||| || ||||| ||| Sbjct 16929123 GCAATTGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTATATTCCTGATTTATCCATTG 16929182 Query 179667 GGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTG 179726 || | || |||||| || ||||| |||||||| || | || || ||| | Sbjct 16929183 GGTCGATCTGGTTGGTTCTTTGCGCCCAATTTTGGTGTAGCAACTATATTTCTATTCATC 16929242 Query 179727 CTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCT 179786 || || | || | || | || |||||| | ||||| || |||||||||||||||||| Sbjct 16929243 CTTTTTTTCCAAAGGTTTTATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCT 16929302 Query 179787 GGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTG 179846 || || |||| | || ||||| | ||||| ||||| | ||| ||||| |||| || Sbjct 16929303 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATATTTTA 16929362 Query 179847 TATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAG 179906 | |||||||| || |||||||| || | || ||| | | || || | |||||| Sbjct 16929363 TTCGAAGATGGTGACGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAG 16929422 Query 179907 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 179950 |||||| ||||||||| | || ||| ||||| || ||||| Sbjct 16929423 ACTTATGTAATGGTCACTACTCACTACTTTTGGTCCCAAATCTT 16929466 >seq1 Length=68435666 Score = 118 bits (130), Expect = 1e-21 Identities = 192/275 (70%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 178560 TACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTC 178619 || || || || ||||||||| ||||| || |||||||| || | || | || ||| Sbjct 3686464 TATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATTTC 3686523 Query 178620 TTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATG 178679 ||| | || | ||||||||||| | ||||||||||| || | | | || || ||| Sbjct 3686524 TTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTATG 3686583 Query 178680 GCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTC 178739 | |||||||| |||| ||||| |||||||| || | | ||| | || | |||| Sbjct 3686584 ACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTGTT 3686642 Query 178740 CTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAG 178799 |||| || ||| | || | |||| | || ||| || |||||||| ||||| || Sbjct 3686643 ATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGAA 3686702 Query 178800 CGCAACGCGCACAACTTCCCGCTTGATCTTGCAGC 178834 || || || ||||||||| | || || || || || Sbjct 3686703 CGTAATGCTCACAACTTCTCTCTAGACCTAGCTGC 3686737 >seq4 Length=57251647 Score = 86.0 bits (94), Expect = 8e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 179833 TAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGA 179892 |||| ||||| || | |||||||| || |||||||| || || ||| | | | Sbjct 3793180 TAGAAAATACTTTATTCGAAGATGGTGACGGTGCAAATACGTTCCGTGCTTTTAACCCAA 3793239 Query 179893 CACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 179952 | || | |||||||||||||| ||||||||||| |||| ||| ||||| || ||||| | Sbjct 3793240 CTCAAGCTGAAGAGACTTATTCAATGGTCACTGCTAACCACTTTTGGTCCCAAATCTTTG 3793299 Query 179953 GTATTGCATTTT 179964 | |||| |||| Sbjct 3793300 GGGTTGCTTTTT 3793311 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 178323 GGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATG 178382 || || |||| ||| |||||||| || ||| ||||| ||||||||||||| || ||| Sbjct 12483529 GGAATATCTGATACTTTCAACTAGAT---TGTATTCCAGGCAGAACACAACAGCCTTATG 12483585 Query 178383 CACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATG 178442 | | || |||||||||| ||| | |||| |||| || || || || ||||| ||| Sbjct 12483586 AATCAATTTCACATGTTGGATGTAACTAGTGTTTTCGATGACTCCCTATTTAGTGCTATG 12483645 Query 178443 CACGGTTCTT 178452 || | ||||| Sbjct 12483646 CATGTTTCTT 12483655 >seq357 Length=580603 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 180041 TGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGA 180100 ||| || ||||| ||||| ||||| || || ||| | || || ||| |||||||| Sbjct 527712 TGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCATTTCCCAAGAAATCCATGCAGCAGA 527653 Query 180101 AGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTT 180140 |||||| || |||||||| ||||||||||| || |||||| Sbjct 527652 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTT 527613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605706133117680