Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq40061 621 4e-173 seq14 174 2e-38 seq1 150 2e-31 >seq40061 Length=156973 Score = 621 bits (688), Expect = 4e-173 Identities = 735/990 (74%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 |||||| | ||| |||| || | ||||| || || | || |||||||| || || Sbjct 1137 TTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1078 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || || | ||| | ||||| ||||| ||||| |||||||| | |||||||| Sbjct 1077 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTCATTATCGCCTTCATTGCTGCTCC 1019 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 || || || || || || || |||||||| || ||||||| || | ||||| ||||| Sbjct 1018 TCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAA 959 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 || ||||||||||| || | || |||| || || ||| | || || ||||| || Sbjct 958 TATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGAT 899 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677 |||||||| ||||| ||||||||||| | || || || ||||||| | || | || Sbjct 898 ATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 839 Query 158678 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCG 158737 | |||||| | | || | | || ||||| ||||| ||||||||| | ||| Sbjct 838 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 779 Query 158738 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGC 158797 | | |||||||| || ||||| ||| |||||||| || || || || || || |||| Sbjct 778 CCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 719 Query 158798 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158857 ||| ||| | |||| ||| | |||||||| |||||| |||| ||||||| | || || Sbjct 718 TGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 659 Query 158858 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158917 ||||||||||| |||| |||| |||||||||| || |||||||||||||||||||| || Sbjct 658 ATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATCC 599 Query 158918 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158977 || || ||| | ||||| ||||| |||||||| || || || ||| |||||||||||| Sbjct 598 ATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 539 Query 158978 AAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTATG 159036 | || || || | | | || | ||||| ||||||| || || || | Sbjct 538 TTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGG 480 Query 159037 GTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCG 159096 |||||| ||||| ||||| |||||||| ||||||||||| || || |||||||| || | Sbjct 479 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 420 Query 159097 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 159156 | || |||||||||||||| ||| |||||||| || |||||||| || |||||| | | Sbjct 419 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGG 360 Query 159157 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 159216 |||| |||||||| || || ||||||||||| || | || | || ||||| |||| Sbjct 359 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 300 Query 159217 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 159276 |||| || |||||||| |||||||| || | |||| ||||||||||||| | |||| Sbjct 299 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACA 240 Query 159277 CCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 159336 | ||||| ||| | | || ||||| || ||||||||||| |||||||| ||||| | Sbjct 239 CTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATG 180 Query 159337 CACACAACTTCCCACTCGACCTTGCTGCTG 159366 | ||||||||||| || ||||| ||||||| Sbjct 179 CTCACAACTTCCCTCTAGACCTAGCTGCTG 150 Score = 547 bits (606), Expect = 7e-151 Identities = 723/994 (73%), Gaps = 8/994 (1%) Strand=Plus/Plus Query 159927 GGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTG 159986 |||| |||||||||||||| ||||||||||| || | || |||| ||||||| | | Sbjct 33104 GGGACCGTTTCGTTTTTGTAGGCTGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCG 33163 Query 159987 CTATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGGTATACCCATGGACTCG 160046 || | || |||||| |||| || |||||||| | ||| ||||||||||||||| | | Sbjct 33164 CTTTAGGAGGTTGGTTTACAGGTACAACTTTTGTAACTTCATGGTATACCCATGGATTGG 33223 Query 160047 CTAGTTCCTATCTTGAGGGT-GCAAACTTTCTT-ACAGCGTCAGTTAGCACTCCAGCTGA 160104 | ||||||||| | || ||| |||| |||||| || || ||||| |||||| || | Sbjct 33224 CCAGTTCCTATTTGGAAGGTTGCAA--TTTCTTGACCGCTGCAGTTTCCACTCCTGCGAA 33281 Query 160105 CGCTATGGGTCATTCTCTTCTT-CTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCA 160163 | | | ||||| ||| || || || ||||| |||||||| ||||||||||| Sbjct 33282 TAGTTTAGCACATTC-CTTGTTGCTACTATGGGGCCCTGAGGCACAAGGGGATTTTACTC 33340 Query 160164 GGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAA 160223 | ||| ||| | || || || |||| |||||| || |||||||||| |||| |||| Sbjct 33341 GTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGTTTTCGGACTAA 33400 Query 160224 TTGGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAAT 160282 | || || ||| | ||||| || ||||| || || ||| | | | || ||||| ||| Sbjct 33401 TAGGTTTTATGTTACGTCAATTCGAACTTGCTCGATCTGTGCAAT-TGCGACCTTATAAT 33459 Query 160283 GCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTG 160342 || || || ||||||| ||| |||||||| ||||| |||||||| || || ||| || Sbjct 33460 GCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTG 33519 Query 160343 GGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTG 160402 ||||| || ||||||| || || || ||||| || ||||| || ||| ||||| | Sbjct 33520 GGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGCGTAGCAGCTATATTTCGATTCATC 33579 Query 160403 TTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCT 160462 | ||| | ||||| ||||| || |||||| | ||||| || ||||||||||||||||| Sbjct 33580 CTCTTCTTCCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCC 33639 Query 160463 GGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTG 160522 || || |||| | || ||||| | || || ||||| | ||| ||||| || || | Sbjct 33640 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTA 33699 Query 160523 TATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAG 160582 | |||||||| || |||||||| || || ||| | | || || | |||||| Sbjct 33700 TTCGAAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAG 33759 Query 160583 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCT 160642 |||||||| ||||||||||| |||||||| ||||| || ||||| || |||| ||||| Sbjct 33760 ACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCC 33819 Query 160643 AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCC 160702 || || || ||| | ||||| || ||| | ||||| || || | ||| | |||| Sbjct 33820 AATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGGTTTATGGATGAGT 33879 Query 160703 AGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAG 160762 | |||| | | || || ||||| || || ||||| || || ||||| ||||| Sbjct 33880 GCTCTTGGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCGTTTCCCAAGAA 33939 Query 160763 ATTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAAT 160822 || | ||||| |||||||| ||||||||||| ||||||||||| || ||||| | || Sbjct 33940 ATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTCTTAAAC 33999 Query 160823 GAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCA 160882 ||||| | ||||| ||| | || || || || || ||||| ||| |||| ||||| Sbjct 34000 GAAGGTATTCGTGCTTGGATGGCGGCTCAGGATCAGCCTCATGAAAACCTTATATTCCCT 34059 Query 160883 GAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 || || ||||| || | || ||||| ||||||| Sbjct 34060 GAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 34093 >seq14 Length=24379743 Score = 174 bits (192), Expect = 2e-38 Identities = 245/344 (71%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 160283 GCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTG 160342 || ||||| ||||||| ||| |||||||| ||||| ||||||| || || |||||| Sbjct 16929123 GCAATTGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTATATTCCTGATTTATCCATTG 16929182 Query 160343 GGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTG 160402 |||| || ||||||| || || || ||||| || ||| | || ||| |||| | Sbjct 16929183 GGTCGATCTGGTTGGTTCTTTGCGCCCAATTTTGGTGTAGCAACTATATTTCTATTCATC 16929242 Query 160403 TTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCT 160462 | || | ||| | ||| | || |||||| | ||||| || |||||||||||||||||| Sbjct 16929243 CTTTTTTTCCAAAGGTTTTATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCT 16929302 Query 160463 GGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTG 160522 || || |||| | || ||||| | || || ||||| | ||| ||||| || | | Sbjct 16929303 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATATTTTA 16929362 Query 160523 TATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAG 160582 | |||||||| || |||||||| || | || ||| | | || || | |||||| Sbjct 16929363 TTCGAAGATGGTGACGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAG 16929422 Query 160583 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 160626 |||||| ||||||||| | || ||| ||||| || ||||| Sbjct 16929423 ACTTATGTAATGGTCACTACTCACTACTTTTGGTCCCAAATCTT 16929466 >seq1 Length=68435666 Score = 150 bits (166), Expect = 2e-31 Identities = 204/281 (73%), Gaps = 5/281 (2%) Strand=Plus/Plus Query 159088 GTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACT 159147 |||| || || || ||||||||| |||| || |||||||| || | || ||| || | Sbjct 3686462 GTTATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATT 3686521 Query 159148 TCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCA--AC 159205 ||||| | |||| |||||||| || | ||||||||||| || || || | | || Sbjct 3686522 TCTTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGC--TTTAAGTATTAGTAC 3686579 Query 159206 CATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCG 159265 ||| | || ||||| || | |||||| |||||||| || | |||| ||||| || | Sbjct 3686580 TATGACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTG 3686638 Query 159266 TGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCA 159325 ||| | || || ||| | ||| | | || | || ||| ||||||||||| ||||| Sbjct 3686639 TGTTATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCA 3686698 Query 159326 TGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTG 159366 ||| ||||| || ||||||||| | || ||||| ||||||| Sbjct 3686699 TGAACGTAATGCTCACAACTTCTCTCTAGACCTAGCTGCTG 3686739 Score = 123 bits (136), Expect = 3e-23 Identities = 244/355 (69%), Gaps = 7/355 (2%) Strand=Plus/Plus Query 159006 GAAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACA 159065 ||||| ||| ||| ||||| || | ||||||| ||| | |||| ||| ||||| Sbjct 30150012 GAAACCACTAAAAATGAGTCTACTAATGAAGGTTACAGATTCAGTCAAGTAGACGAAACT 30150071 Query 159066 TATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 159125 ||||||| || | |||||||||| || || | || |||| | ||| ||| ||| Sbjct 30150072 CATAATATTGTAGGTGCCCATGGTTTATTTGGCAGATTTATCTCACGATATGCTAGTTTC 30150131 Query 159126 AACAACTCCCGTTCCTTG-CACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 159184 ||||| || ||||||| || || || | ||||| |||| || ||||| |||| ||| Sbjct 30150132 AACAATTCTTGTTCCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTCGGTATCTAGTT 30150191 Query 159185 CACCGCCCTTGGCGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 159242 | || || ||| ||| || ||| | || ||||| || |||||||| | |||||| Sbjct 30150192 ACCTGC--TTTACGTATCAGTACTATGACTTTTAACCTAAATGGTTTCAATTCCAACCAA 30150249 Query 159243 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGC- 159301 | | | || ||||||| ||| | | || || | | ||| | | || | || Sbjct 30150250 ACTAATGTAGACAATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGT 30150309 Query 159302 AGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAC 159356 | || || ||||||||| ||| |||| |||| || ||||||||||| || ||| Sbjct 30150310 AAGTTTGA-TATGGAAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGAC 30150363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552196941938880