Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq40061 603 1e-167 seq14 168 8e-37 seq1239 134 2e-26 seq1 122 1e-22 seq5 86.0 8e-12 seq7 84.2 3e-11 >seq40061 Length=156973 Score = 603 bits (668), Expect = 1e-167 Identities = 731/990 (74%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 |||||| | ||| |||| ||| | || ||| | || |||| ||||||||||| || Sbjct 1137 TTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1078 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| ||||| ||||| | || ||| | || || || Sbjct 1077 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTCATTATCGCCTTCATTGCTGCTCC 1019 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || |||||||| || ||||||| || | ||||||||||| Sbjct 1018 TCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAA 959 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 || ||||||||||| || | || | ||| || || ||| | || || || || || Sbjct 958 TATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGAT 899 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||| ||||| | ||||||||| | || || || ||||||| | || | || Sbjct 898 ATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 839 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | |||||| | | || | | || ||||| ||||||||||||||| || ||| Sbjct 838 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 779 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 || ||||||||||| ||||| ||||||||| || || || || || ||||| | ||| Sbjct 778 CCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 719 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 || ||| | |||| ||| | |||||||| ||||||||||| ||||||| | || || Sbjct 718 TGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 659 Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399 ||||||||||| |||| |||| |||||||||| || |||||||||||||||||||| || Sbjct 658 ATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATCC 599 Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 || || ||| | ||||| ||||| |||||||| || || || ||| ||||||||| || Sbjct 598 ATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 539 Query 179460 AAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATG 179518 | || || | || | ||| || | ||||| ||||| | || || || | Sbjct 538 TTCCTTGGTAACCT-CTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGG 480 Query 179519 GTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 179578 |||| | ||||| ||||| ||||| || ||||| ||||| || || ||||| || || | Sbjct 479 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 420 Query 179579 GTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTG 179638 | || ||||||||||||||||| || ||||| || || || || || |||||| | | Sbjct 419 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGG 360 Query 179639 CTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCA 179698 |||| ||||| || || || ||||||||||||||| | || | || ||||| |||| Sbjct 359 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 300 Query 179699 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACA 179758 |||| || |||||||| |||||||| || | ||||| |||| || ||||| | |||| Sbjct 299 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACA 240 Query 179759 CATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACG 179818 | ||||| || | | || ||||| | ||||||||||| |||||||| ||||| | Sbjct 239 CTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATG 180 Query 179819 CACACAACTTCCCACTCGACCTTGCTGCTG 179848 | ||||||||||| || ||||| ||||||| Sbjct 179 CTCACAACTTCCCTCTAGACCTAGCTGCTG 150 Score = 538 bits (596), Expect = 4e-148 Identities = 721/988 (73%), Gaps = 16/988 (2%) Strand=Plus/Plus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 ||||| || || ||||| ||||||||||| ||| | || |||| ||||||| | || Sbjct 33106 GACCGTTTCGTTTTTGTAGGCTGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 33165 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| |||| || ||| ||||||| || ||||| ||||| || | || Sbjct 33166 TTAGGAGGTTGGTTTACAGGTACAACTTTTGTAACTTCATGGTATACCCATGGATTGGCC 33225 Query 180171 TCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCTGTCTCGACGCCTGCTGACGC 180229 ||||||| | |||||| || |||||| || || || || || || ||||| | Sbjct 33226 AGTTCCTATTTGGAAGGTTGCAA-TTTCTTGACCGCTGCAGTTTCCACTCCTGCGAATAG 33284 Query 180230 TATGGGTCATTCTCTTCTT-CTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGT 180288 | | | ||||| ||| || ||||| ||||| |||||| | || ||| |||| || | Sbjct 33285 TTTAGCACATTC-CTTGTTGCTACTATGGGGCCCTGAGGCACAAGGGGATTTTACTCGTT 33343 Query 180289 GGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTG 180348 |||| ||| | || || || |||| ||| || |||||||| |||| |||| ||||| | Sbjct 33344 GGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGTTTTCGGACTAATAG 33403 Query 180349 GATTTATGCTACGCCAGTTTGAACTGGCACG-TCTTATTGGTATC-CGTCCTTACAATGC 180406 | |||||| |||| || || ||||| || || ||| || || || ||||| ||||| Sbjct 33404 GTTTTATGTTACGTCAATTCGAACTTGCTCGATCTG--TGCAATTGCGACCTTATAATGC 33461 Query 180407 TATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGG 180466 || |||||||||| ||| || ||||| ||||| ||||| || || || |||||||| Sbjct 33462 AATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGG 33521 Query 180467 TCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACT 180526 ||| || ||||||||||||| ||| |||||| |||||||| || ||| ||||| | || Sbjct 33522 TCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGCGTAGCAGCTATATTTCGATTCATCCT 33581 Query 180527 CTTTCTTC--AGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCT 180584 | |||||| ||||||| || || ||||| | ||||| || ||||||||||||||||| Sbjct 33582 C-TTCTTCCAAGGGTTT-CATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCC 33639 Query 180585 GGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTG 180644 || || |||| | || |||||| || || ||||| | || || |||| | ||| Sbjct 33640 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGT--AGAAAATACTT 33697 Query 180645 TAT--GAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGG 180702 ||| |||||||| || ||||| || || || ||| | |||| |||| || | Sbjct 33698 TATTCGAAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAG 33757 Query 180703 AAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTT 180762 | ||||| || ||||||||||| |||||||| ||||| || ||||| || |||| |||| Sbjct 33758 AGACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTT 33817 Query 180763 CTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACAT 180822 | || || || ||| | ||||| || ||| | ||||| || || | ||| |||||| Sbjct 33818 CCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGGTTTATGGATGA 33877 Query 180823 CCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAG 180882 || |||| | | || || ||||| ||||| ||||| || || ||||| |||| Sbjct 33878 GTGCTCTTGGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCGTTTCCCAAG 33937 Query 180883 AGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGA 180942 | ||| | ||||| ||||||||||| || ||||| ||||||||||| || ||||| || | Sbjct 33938 AAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTCTTAA 33997 Query 180943 ATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCC 181002 | ||||| | ||||| ||| |||| || ||||| || || |||||| | || |||| Sbjct 33998 ACGAAGGTATTCGTGCTTGGATGGCGGCTCAGGATCAGCCTCATGAAAACCTTATATTCC 34057 Query 181003 CTGAAGAAGTTCTACCAAGAGGTAACGC 181030 |||| || |||||||| | || ||||| Sbjct 34058 CTGAGGAGGTTCTACCCCGTGGAAACGC 34085 >seq14 Length=24379743 Score = 168 bits (186), Expect = 8e-37 Identities = 246/346 (71%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 180405 GCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTG 180464 || ||||||||||||| ||| || ||||| ||||| |||| || || || ||| || Sbjct 16929123 GCAATTGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTATATTCCTGATTTATCCATTG 16929182 Query 180465 GGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTA 180524 |||| || ||||||||||||| ||| |||||| |||||| | || ||| |||| | Sbjct 16929183 GGTCGATCTGGTTGGTTCTTTGCGCCCAATTTTGGTGTAGCAACTATATTTCTATTCATC 16929242 Query 180525 CTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCT 180584 || ||| | || | || | || ||||| | ||||| || |||||||||||||||||| Sbjct 16929243 CTTTTTTTCCAAAGGTTTTATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCT 16929302 Query 180585 GGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTG 180644 || || |||| | || |||||| || || ||||| | || || |||| | | | Sbjct 16929303 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGT--AGAAAATATTT 16929360 Query 180645 TAT--GAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGG 180702 ||| |||||||| || ||||| || || | || ||| | |||| |||| || | Sbjct 16929361 TATTCGAAGATGGTGACGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAG 16929420 Query 180703 AAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 180748 | ||||| ||||||||| | || ||| ||||| || ||||| Sbjct 16929421 AGACTTATGTAATGGTCACTACTCACTACTTTTGGTCCCAAATCTT 16929466 >seq1239 Length=80461 Score = 134 bits (148), Expect = 2e-26 Identities = 168/227 (74%), Gaps = 9/227 (4%) Strand=Plus/Plus Query 180398 TTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTA 180457 ||| ||||| || |||||||||| ||| || ||| | ||||| |||||| |||| || Sbjct 69230 TTATAATGCAATCGCATTCTCTGTTCCAATTGCTATTTTTGTTTCCGTATTCTTCATTTA 69289 Query 180458 CCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAG 180517 ||||||||||| || |||||||||||||| ||| || || ||||| || ||| | Sbjct 69290 TCCACTGGGTCAATCTAGTTGGTTCTTTGCACCC-----AGGTGTTGCAGCTATATTTTG 69344 Query 180518 ATTCCTACTCTTTCTTC--AGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATG 180575 |||| | ||| |||||| ||||||| || || |||| | ||||| || ||| ||| | Sbjct 69345 ATTCATCCTC-TTCTTCCAAGGGTTT-CATAATTGGATGTTGAACCCATTTCATTTGACG 69402 Query 180576 GGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGG 180622 |||||||| || || ||||| || |||||| | || ||||| Sbjct 69403 GGAGTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGG 69449 >seq1 Length=68435666 Score = 122 bits (134), Expect = 1e-22 Identities = 194/277 (70%), Gaps = 1/277 (0%) Strand=Plus/Plus Query 179572 TACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTC 179631 || || || || ||||||||| ||||| | || ||||| || | | || || ||| Sbjct 3686464 TATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATTTC 3686523 Query 179632 TTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATG 179691 ||| | |||| ||||| || || | ||||||||||||||| | | | || ||| Sbjct 3686524 TTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTATG 3686583 Query 179692 GCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTC 179751 | || ||||| || | |||||| |||||||| || | ||||| |||| | |||| Sbjct 3686584 ACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTGTT 3686642 Query 179752 CTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAG 179811 | || || ||| | || | | || | || | | ||||||||||| |||||||| Sbjct 3686643 ATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGAA 3686702 Query 179812 CGTAACGCACACAACTTCCCACTCGACCTTGCTGCTG 179848 ||||| || ||||||||| | || ||||| ||||||| Sbjct 3686703 CGTAATGCTCACAACTTCTCTCTAGACCTAGCTGCTG 3686739 >seq5 Length=51955539 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 180475 GTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCT-T 180533 ||| ||||||||| ||| |||| | |||||||| || ||| ||||| | |||||| | | Sbjct 12569950 GTTCGTTCTTTGCGCCCAATTTTAGCGTAGCAGCTATATTTCGATTCATCCTCTTTTTCT 12570009 Query 180534 CAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTA 180593 |||||||| | || || | | ||||| || |||||||||||| ||| ||| || || Sbjct 12570010 AAGGGTTTC-ATAATTGAATGTTGAACCCATTTCATATGATGGGAATTGTTGGAGTATTA 12570068 Query 180594 GGTG 180597 |||| Sbjct 12570069 GGTG 12570072 >seq7 Length=43454766 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 180897 GAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGT 180956 ||||||||||| || ||||| ||||| | ||| || ||||| || ||||||| | ||| Sbjct 40226800 GAAGATCCTGAATTTGAGACTTTCTATATCAAAAATATCCTCTTAAATGAAGATATTCGT 40226859 Query 180957 GCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTA 181016 || ||| |||| || |||||||| || |||| | || |||||||| | |||||| Sbjct 40226860 GCTTGGATGGCGGCTCAAGATCAACCTCATAAAAATCTTATATTCCCTGAGAAGGTTCTA 40226919 Query 181017 CCAAGAGGTAACGC 181030 || | || || || Sbjct 40226920 TCATGTGGAAATGC 40226933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610023969823680