Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7 125 1e-23 seq3 125 1e-23 seq2 107 3e-18 >seq7 Length=43454766 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | |||| | || | |||||| |||| ||| || Sbjct 13983413 TCCCCCTTGATCAACATAACGAGCAGTATCATTAAACACCCGCAGCATTGGAACAATGCC 13983354 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | |||||||| ||| ||||||||| ||| | || || |||||| || || Sbjct 13983353 ATTAGAAGTTCCATTTGTCCCACGAATATAACTGCCTGTGGCACGTATATTATGAACTGA 13983294 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || || || | |||||| ||||| ||||||||||| Sbjct 13983293 AACACCAATTCCTCCAGCAGACTTGCTTATGACAGCACATTCCTTCAAAGTGTCATATAT 13983234 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| || ||||||||| ||||| | ||| || ||||| Sbjct 13983233 TCCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCT 13983192 Score = 105 bits (116), Expect = 9e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || || ||||||||||| ||||| || ||||||||||| || ||| | || || Sbjct 13983080 AGTGCCTGCGTTAAATAATGTTGGAGAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 13983021 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||| | | | || || ||||| || || ||||| | || || | ||||| Sbjct 13983020 ATATGTTCTGAGAACAGAATCAATATCATTCTTGTGGATTCCAACAGCAACTCTCATCAG 13982961 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | |||||| ||| | | |||||| ||||| ||| | || || Sbjct 13982960 CATGTGTTGTGGCCTTTCTACTACTTTTCCAGAAACTTTCAAGAGGTAAGATCTCTCGAG 13982901 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||| ||||| ||||| |||| || |||||| || || ||||| || Sbjct 13982900 AGTCTTAAAACCAAAGTAGTCATAATCAAAGTCCCTATCATAAATTAT 13982853 >seq3 Length=60060032 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | |||| | || | ||||||||| | ||| || Sbjct 21218292 TCCCCCTTGATCAACATAACGAGCAGTATCATTAAACACCCGCAGCATCGGCACAATGCC 21218233 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | |||||||| ||| ||||||||| ||| | ||||| |||||| || || Sbjct 21218232 ATTTGAAGTTCCATTTGTCCCACGAATATAACTACCTGTGGCGCGTATATTATGAACTGA 21218173 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| ||||||||||| || || | |||||| |||| |||||||| || Sbjct 21218172 AACACCAATTCCTCCTGCAGACTTGCTTATGATAGCACATTCCTTCAGAGTGTCATAGAT 21218113 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| || ||||||||| ||||| | ||| |||||||| Sbjct 21218112 TCCCTCAATACTATCATCTTTCATGCAGATAAGGAAACAGCT 21218071 Score = 123 bits (136), Expect = 3e-23 Identities = 123/157 (78%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | | || | ||||| || || ||||| Sbjct 42479787 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTGAG 42479846 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| ||||||||||| |||||||| || |||| |||| || || ||||| |||| Sbjct 42479847 CCCCGGCATGAGACCACGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAGCCAGAGAAGA 42479905 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 |||| || || || || ||||||||||| || | ||| Sbjct 42479906 AGATCCCCTCAACGGCGGCAAATGCAACGAGGCGCTC 42479942 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || ||||||||||||||||| || || ||||||||||| || ||| | || || Sbjct 21217964 AGTGCCTGCATTAAATAATGTAGGGGAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 21217905 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||||||| | | | || || ||||| || || ||||| | || || | |||||| Sbjct 21217904 GTATGTTCTGAGAACAGAATCAATATCATCCTTGTGGATTCCAACAGCAACTCTCATCAA 21217845 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | ||||| ||| | | |||||| || || ||| | || || Sbjct 21217844 CATGTGTTGTGGCCTCTCTACTACTTTTCCAGAAACTTTCAAGAGATAAGATCTCTCAAG 21217785 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||| ||||| |||||||| | || |||||| || || ||||| || Sbjct 21217784 AGTCTTAAAACCAAAATAATCATAATCAAAGTCCCTGTCATAAATTAT 21217737 >seq2 Length=65558141 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | ||||| | |||| | || |||| ||| |||| || ||| Sbjct 13677194 CCCCCTTGATCAACATAACGAGCAGTATCATTAAAAACCCTCAACATTGGAACGATGCCA 13677253 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||| ||| |||||||| || |||| |||||||| | |||| Sbjct 13677254 TTGGATGTCCCATTTGTCCCACGGATATAACTACCAGTTGCACGAATATTGTGAGCAGAT 13677313 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || | |||||| || ||| || | |||||| || || || |||||||| Sbjct 13677314 ATGCCAACTCCTCCAGCAGATTTGCTTATAACAGCACACTCCTTTAAAGTATCATATATG 13677373 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| |||||||||||| ||||| || | || |||||| Sbjct 13677374 CCCTCAATGCTATCATCTTTCATGCAAACCAAGAAGCAGCTA 13677415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686564821832040