Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5 116 3e-21 seq12 107 2e-18 seq14 95.1 1e-14 seq6 95.1 1e-14 seq1 89.7 4e-13 >seq5 Length=51955539 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || || |||||| | | |||| |||||||||||||||| ||| Sbjct 10328010 GTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGTTTTCCG 10327951 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || ||||| || | |||||||| || ||||||| || Sbjct 10327950 GCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTG 10327891 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | |||||||||||||| Sbjct 10327890 ACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGAGTC 10327831 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 10327830 TTCACGAAGATCTGCAT 10327814 >seq12 Length=28800575 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || |||||||| |||||||| || ||||| | || || Sbjct 14046584 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGTGTGCGCCCATCCTCC 14046525 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||||||||| || | ||||||||||| ||||| || || | ||||| ||||| | Sbjct 14046524 AGCTGTTTACCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGG 14046465 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||| | | || || || || || || | || Sbjct 14046464 ATCTTAGCCTTTACATTGTCAATGGTGTCGGAGCTCTCTACCTCAAGGGTGATGGTCTTT 14046405 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| ||||||||||| ||||| Sbjct 14046404 CCGGTAAGAGTCTTCACAAAGATCTGCAT 14046376 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || |||||||| |||||||| || ||||| | || || Sbjct 14079121 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAACGTGCGCCCATCCTCC 14079062 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||||||||| || | ||||||||||| |||||||| || | ||||| ||||| | Sbjct 14079061 AACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGG 14079002 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||| | | || || || || || || | || Sbjct 14079001 ATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCAAGGGTGATGGTCTTT 14078942 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||||||||| ||||| Sbjct 14078941 CCAGTGAGGGTCTTCACAAAGATCTGCAT 14078913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || |||||||| |||||||| || ||||| | || || Sbjct 14035544 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGCGTGCGCCCATCCTCC 14035485 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||||||||| || | || || ||||| ||||| || || | ||||| ||||| | Sbjct 14035484 AGCTGTTTACCAGCAAAGATAAGCCGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGG 14035425 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || || | | || | ||||| | | || || || || || || | || Sbjct 14035424 ATTTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCGAGGGTGATGGTCTTT 14035365 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || |||||||| ||||| Sbjct 14035364 CCAGTGAGGGTCTTTACAAAGATCTGCAT 14035336 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 27063 TGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGA 27122 || ||||||||||| || |||| | || || || ||||| || || ||||||| Sbjct 14045923 TGGATATTGTAGTCAGCCAAAGTGCGACCATCCTCAAGTTGTTTGCCAGCAAAAATGAGC 14045864 Query 27123 CGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACA 27182 | ||| || || || || | ||||| ||||| ||||||| || | | || | Sbjct 14045863 CTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTATCAATG 14045804 Query 27183 GTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATT 27242 ||||| | | |||||||| || || |||| ||||| || ||||| || |||||||| Sbjct 14045803 GTGTCCGAGCTCTCAACTTCCAGGGTAATAGTCTTGCCAGTGAGAGTCTTAACAAAGATC 14045744 Query 27243 TGCAT 27247 ||||| Sbjct 14045743 TGCAT 14045739 >seq14 Length=24379743 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| | | |||| | || |||||||| || ||| Sbjct 6055541 GTGGACTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTTCCG 6055482 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || ||||| |||||||| || | ||||| || || ||||||| || Sbjct 6055481 GCGAAGATAAGGCGCTGCTGATCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 6055422 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | ||||| || || || Sbjct 6055421 ACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 6055362 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||| ||||| Sbjct 6055361 TTGACAAAGATCTGCAT 6055345 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| | | |||| | || |||||||| || || Sbjct 6042242 GTGGACTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 6042183 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || ||||| |||||||| || | ||||| || || ||||||| || Sbjct 6042182 GCGAAGATAAGGCGCTGCTGATCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 6042123 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | ||||| || || || Sbjct 6042122 ACGTTGTCGATTGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 6042063 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||| ||||| Sbjct 6042062 TTAACAAAGATCTGCAT 6042046 >seq6 Length=44357769 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || |||||||| || || ||| | | |||| ||||||| ||||| || ||| Sbjct 21861009 GTGGACTCCTTTTGAATGTTATAATCGGCGAGGGTGCGGCCGTCTTCCAGCTGCTTGCCG 21861068 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| || ||||| || | ||||||||||| ||||||| || Sbjct 21861069 GCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTG 21861128 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || | ||| || | ||||| || || || Sbjct 21861129 ACGTTGTCGATCGTGTCCGACGACTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTC 21861188 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 21861189 TTGACGAAGATCTGCAT 21861205 >seq1 Length=68435666 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || ||||| |||||||| || | | | | |||| || || || || ||| Sbjct 29766318 GTAGACTCCTTTTGGATATTGTAATCCGCGAGAGTCCTCCCGTCCTCCAGTTGCTTCCCG 29766377 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || | ||| || |||||||| | ||||| ||||| |||||| ||| Sbjct 29766378 GCGAAGATCAGCCTCTGCTGGTCCGGCGGAATCCCCTCCTTATCCTGGATCTTCGCCTTC 29766437 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | |||||| | | || || || || || || | || ||||| ||||| Sbjct 29766438 ACGTTGTCAATAGTGTCCGAGCTCTCCACCTCGAGGGTGATCGTCTTACCCGTGAGAGTC 29766497 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 29766498 TTCACGAAGATTTGCAT 29766514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424726928567832