Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 1e-14 seq67 84.2 7e-11 >seq3 Length=60060032 Score = 96.9 bits (106), Expect = 1e-14 Identities = 127/175 (73%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 443700 TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTT 443759 |||| |||||| || || || ||||| | || || || | || || ||| ||| Sbjct 42479948 TTCGCCGAGCGCCTCGTTGCATTTGCCGCCGTTGAGGGGATCTTCTTCTCTGGCTCCTTC 42479889 Query 443760 AGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGA 443819 || |||||||||||| | || |||||||| || |||| || || ||||| ||||| Sbjct 42479888 TGC-TCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCTCCAACGA 42479830 Query 443820 ACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 || ||| ||| |||||||| | || |||||||||||||| || |||||| || Sbjct 42479829 GCTCATCTCTCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCC 42479775 >seq67 Length=1088699 Score = 84.2 bits (92), Expect = 7e-11 Identities = 125/176 (71%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||||| ||||| || || || || ||| || || || | || || |||| ||| Sbjct 292133 CTTCGCGGAGCGCCTCGTGGCCTTCTCTGCTGTTGAGGGGATCTTCTTCTCCGGCTCCTT 292074 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | |||||||||||| | || ||||| || || |||| || |||||||| |||| Sbjct 292073 CTGT-TCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTGACCTTCTCCAACG 292015 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 | || ||| || |||||||| | || |||||||||||||| || |||||| || Sbjct 292014 AGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCC 291959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587520736416145