Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 125 9e-24 seq16 123 3e-23 seq3 109 7e-19 seq67 102 1e-16 seq15 95.1 2e-14 seq7 89.7 6e-13 >seq4 Length=57251647 Score = 125 bits (138), Expect = 9e-24 Identities = 232/336 (69%), Gaps = 6/336 (2%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 ||| |||||||| | ||||| ||||| ||||| || | || ||||| | ||||| Sbjct 44157249 ATCTAGGATATCTGCACGATTGGTGGCTGCAATTACAATTATTCCAGTATTTCCTTCAAA 44157190 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 ||||||||||| || | | ||||||| |||||||||||||||||||| | | | Sbjct 44157189 CCCATCCATCTCAGTCAACAGCTGATTAAGAGTTTGTTCTCTCTCATCATT--CCCACCT 44157132 Query 11602 ACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 | | || | | | |||| | || || |||||||||||||| | || | || || Sbjct 44157131 CCAATTCCTGTTCCTCTTTGCCTTCCAACAGCATCAATCTCATCCACAAAAATGATGCAA 44157072 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||| || ||| | | ||| ||||| || || | | ||||| ||||||||| Sbjct 44157071 GGCGCATTCTCTTTGGCCTTCTTAAAAAGATCACGGACTCGTGAAGCACCTACACCAACA 44157012 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGC 11778 |||||||| ||||| | | | |||| | || || ||||| ||| || |||||| || Sbjct 44157011 AACATCTCTACAAACTCAGAGCCAGA-AATTGAGAAAAATGGAACACCTGCTTCACCAGC 44156953 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || ||| || | || || || || ||||| Sbjct 44156952 AATTGCCTTGGCAAGCAATGTTTTCCCAGTTCCTGG 44156917 >seq16 Length=21371083 Score = 123 bits (136), Expect = 3e-23 Identities = 321/487 (66%), Gaps = 2/487 (0%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | || | ||| ||| || || || | || || ||||| ||| Sbjct 17436926 TCAAAGCGTCCGGGCCTCAGCAAAGCGGAATCTAGAATGTCTGCACGGTTTGTGGCTGCA 17436867 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 || || | ||| ||||| | ||||| ||||||||||| || | | ||||||| Sbjct 17436866 ATTACTATAATACCAGTATTTCCTTCAAAACCATCCATCTCTGTCAAAAGCTGATTAAGA 17436807 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCA 11632 ||||||||||| ||||||||| || | ||| | | | |||| | || || ||| Sbjct 17436806 GTTTGTTCTCTTTCATCATTTCCTCCTCCAATACCTGTTCCTCTTTGCCTTCCAACAGCA 17436747 Query 11633 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 11692 ||||| ||||||| || ||||| ||||| ||| || ||| | | || ||||| Sbjct 17436746 TCAATTTCATCAACAAACACAATGCATGGAGCATTCTCTTTGGCCTTCTTGAAAAGATCA 17436687 Query 11693 CGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG- 11751 ||||| | ||||| || |||||||||||||| ||||| | | | || | || Sbjct 17436686 CGAACTCGCGAAGCACCAACTCCAACAAACATCTCTACAAACTCAGACCCTGA-AATTGA 17436628 Query 11752 GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACC 11811 || ||||| ||| || ||| || || || || || || | ||||| || || || Sbjct 17436627 GAAAAATGGAACACCTGCTTCTCCTGCAATTGCCTTAGCAAGCAAAGTCTTCCCAGTTCC 17436568 Query 11812 TGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTC 11871 || ||| | ||||| | ||| || || ||||| | || | |||| || Sbjct 17436567 CGGAGGACCAACAAGAAGAACACCTTTAGGAATACGAGCACCTACTGCAGTAAATCTTTC 17436508 Query 11872 GGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTC 11931 |||| ||| | ||| ||||| | ||| || || | |||||| | || | || | Sbjct 17436507 AGGTTTCTTCAAAAACTCCACCACCTCCATAAAATCCTGTTTGGCTTCATCTACTCCAGC 17436448 Query 11932 AACATCA 11938 ||||||| Sbjct 17436447 AACATCA 17436441 Score = 114 bits (126), Expect = 2e-20 Identities = 279/416 (67%), Gaps = 10/416 (2%) Strand=Plus/Plus Query 11443 GATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATT 11502 || || ||| ||||| || || || || || || || ||||||| | |||| | || Sbjct 21068878 GACCTGGCGGTCAAATCGGCCAGGCCGCAGCAGAGCAGCATCAAGCACATCCGGCCTGTT 21068937 Query 11503 AGTGGCCGCAATAACCACAATGCCAGTCT-CATTGTCAAAGCCATCCATCTCGGTGAGTA 11561 || || |||| ||| | | ||| | | | | ||| |||||||| || || | | Sbjct 21068938 GGTCGCTGCAAGAACAATGACCCCACTATTCCCCGAGAAA-CCATCCATTTCCGTCAAGA 21068996 Query 11562 ATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTG 11619 |||||||| || || || ||||||||||| | | | | | || || | || || Sbjct 21068997 GCTGATTAATAGTCTGCTCCCTCTCATCATTCCCA--CCTCCGAGACCGGCCCCCCGCTG 21069054 Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCG--GGCG 11677 | | ||||||||||||||||| || ||||||||||| || || | ||||| ||| Sbjct 21069055 CCTCCCCACCGCATCAATCTCGTCGATGAAGACAATGCAGGG--GGCTTTCGACTTGGCC 21069112 Query 11678 ATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTT 11737 | || || | ||| || || | || || || ||||| || | |||||| || | Sbjct 21069113 TTCTCGAACAAATCCCGGACACGAGAAGCTCCGACTCCAACGAAGAGCTCCACGAATTCG 21069172 Query 11738 GCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGG 11797 | ||| | |||| || ||| || || | || || |||| ||| ||||| ||||| Sbjct 21069173 GAGGCGGCGCACGAGAAGAAGGGCACCCCGGCCTCGCCGGCGACGGCCCGGGCCAGGAGA 21069232 Query 11798 GTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 |||||||| || || || ||| | | ||| |||| |||||||||||| || Sbjct 21069233 GTCTTTCCGGTGCCGGGAGGACCGACCAAGAGGCAGCCTTTGGGGATCTTGGCGCC 21069288 >seq3 Length=60060032 Score = 109 bits (120), Expect = 7e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || || || || || || || |||||| || || ||||||||||| Sbjct 42479802 GTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACC 42479861 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | |||||| || || ||||||||||| ||||| || Sbjct 42479862 ACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCAGAGAAGAAGATCCCCTCAACGGC 42479921 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 ||||| |||| ||||| |||||||| || Sbjct 42479922 GGCAAATGCAACGAGGCGCTCGGCGAAAGA 42479951 >seq67 Length=1088699 Score = 102 bits (112), Expect = 1e-16 Identities = 142/198 (72%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 291986 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCGGCATGAGGCC 292045 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | ||||| || |||||||||||||| ||||| ||| Sbjct 292046 GCGCTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCGGAGAAGAAGATCCCCTCAACAGC 292105 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAG--CGAGACTTTGCATCAAACCATTTCATT 122847 | || || | ||||| || ||||||||| |||| | |||| ||| | | Sbjct 292106 AGAGAAGGCCACGAGGCGCTCCGCGAAGGAGTCCGAG-----GACTCAATCCACTGGAGC 292160 Query 122848 GCCCATTTCGCCTTCTTC 122865 ||||| | ||||||||| Sbjct 292161 GCCCACTGGGCCTTCTTC 292178 >seq15 Length=24314465 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || || | ||| || | |||||||||||| ||||||||| || | Sbjct 15395062 AAACCATCCATTTCAGTAAGCAGTTGGTTCAATGTTTGTTCTCTTTCATCATTTCCT--C 15395005 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | | | |||| | | |||| | || || ||||||||||| ||||||||||| | || Sbjct 15395004 CTCCAATTCCAGTTCCTCTTTGCCTTCCTACTGCATCAATCTCGTCAATGAAGACCAGAC 15394945 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 |||| |||| | || | | ||| | ||| | ||| || || || ||||| | Sbjct 15394944 ATGGAGAATTTGCTGTTGCCTTATTAAACAAATCCCTAACTCTCGAAGCCCCTACACCGA 15394885 Query 11718 CAAACATCTC 11727 |||||||||| Sbjct 15394884 CAAACATCTC 15394875 >seq7 Length=43454766 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 || ||||||||||||||||| ||||| || ||| | |||| |||||| || || Sbjct 13984708 GCAATTGATGCCAAATTGCACACAGCAGTTTCAGTAGGACTTGTGAACTCTATTATCTCA 13984649 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 ||||||||||| ||| ||| || ||||||| ||| | ||| ||||| || | ||||| Sbjct 13984648 GTACATAAGTTTGAAGACTTGATAGTCCCCAGATTTTGTTGATTACTTTTTCTATTGCAA 13984589 Query 111356 GCATCCT 111362 | ||||| Sbjct 13984588 GTATCCT 13984582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627717505125600