Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq67 156 5e-33 seq3 138 1e-27 seq4 100 4e-16 seq16 84.2 3e-11 >seq67 Length=1088699 Score = 156 bits (172), Expect = 5e-33 Identities = 194/264 (73%), Gaps = 9/264 (3%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||| ||||||||||| || || |||||| ||| || |||||||| || Sbjct 291986 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCGGCATGAGGCC 292045 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || | ||| || ||||| ||||||||||||||||| ||| Sbjct 292046 GCGCTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCGGAGAAGAAGATCCCCTCAACAGC 292105 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAG--CG-GGACTTTGTATCAAACCACTTCAT 130203 | ||| || | ||| ||||| || |||||| || |||| |||| ||||| | Sbjct 292106 AGAGAAGGCCACGAGGCGCTCCGCGAAGGAGTCCGAGGAC------TCAATCCACTGGAG 292159 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 ||||||||| ||||| ||| | | |||||| |||| || || ||| || | Sbjct 292160 CGCCCACTGGGCCTTCTTCGCCACCGCCGGGACCGTCTCGACAGCACGAAAAAGGCGGTC 292219 Query 130264 CTTTTCTGATGGATCTTTGATGTA 130287 ||||| || ||||||||||| Sbjct 292220 TTTTTCGTCAGGGTCTTTGATGTA 292243 >seq3 Length=60060032 Score = 138 bits (152), Expect = 1e-27 Identities = 316/460 (69%), Gaps = 22/460 (5%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCCA 129785 ||||| || |||| |||||||||||| || |||||||| | ||| |||||| ||||| Sbjct 42479503 TAGTCTCCGACCCTCTTCTCGAAGAAATTAGTCTTCCCTTG-AAG-TGATATCAGCTCCA 42479560 Query 129786 TAAAATCAAATGGGTTCTTTGAGT--TCCAAATTGCTGGCAC-TCCAATCTGTTTGAGGA 129842 | | || ||||| ||| | ||| || | ||| ||| | | || Sbjct 42479561 TCCAGTCGAATGGATTCGCCACCCCGTACAACTTTC---CACATCCCAAAGCCAACAAGA 42479617 Query 129843 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-G 129901 | ||||||| ||| |||||||||||| |||| || |||||| || | || | Sbjct 42479618 GCCGATCCGCCACGAACTCAATGTACTGGCTCATCAAATCCCCGTTCATCCCCACCAGCG 42479677 Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961 || || |||||||| | | |||| || |||||||||||||||| || | ||| Sbjct 42479678 CCACC-GGCAGCGCGTCGCAAACGAACTCCCTCTCAATGTCCACAGCGTCGGCGATGATC 42479736 Query 129962 GCGTGAATG--GTC-TCCGTGCCAGGT--CTATTGCGCAAAGTCTTGAAGAGTTCCACGG 130016 | | ||| ||| |||| | || | | ||| | | | | || ||| || || Sbjct 42479737 GACTTGATGCGGTCCTCCGAG--AGCTTGCGGTTGAGGAGGGAGTAGAGGAGG--CA-GG 42479791 Query 130017 CAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 130076 | || || |||||| |||||||| || |||||||| || || |||||| || || | Sbjct 42479792 CGAAGTCGCAGTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTGAGCCCCG 42479851 Query 130077 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 130136 |||||||||| |||||||| | |||||| || | || || ||||||||||||||||||| Sbjct 42479852 GCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCAGAGAAGAAGATCC 42479911 Query 130137 CCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 |||| || || || |||| ||| ||||| || || || Sbjct 42479912 CCTCAACGGCGGCAAATGCAACGAGGCGCTCGGCGAAAGA 42479951 >seq4 Length=57251647 Score = 100 bits (110), Expect = 4e-16 Identities = 256/382 (67%), Gaps = 11/382 (3%) Strand=Plus/Minus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155 || |||||||| || || || || || || |||| || || || | ||||| Sbjct 44157248 TCTAGGATATCTGCACGATTGGTGGCTGCAATTACAATTATTCCAGTATTTCCTTCAAAC 44157189 Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATA 14215 ||||||||||||||||| || ||||| | |||||||| | ||||||||| || | | Sbjct 44157188 CCATCCATCTCAGTCAACAGCTGATTAAGAGTTTGTTCTCTCTCATCATTCCCA--CCTC 44157131 Query 14216 CCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATG 14273 | | || | | | |||| | || || || ||||| ||||| | |||| ||| || | Sbjct 44157130 CAATTCCTGTTCCTCTTTGCCTTCCAACAGCATCAATCTCATCCACAAAAATGATGCAAG 44157071 Query 14274 GTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331 | ||| || ||| |||| ||| | ||| || |||| ||||| ||||| || Sbjct 44157070 GCGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGGACTCGTGAAGCACCTACACCAAC 44157013 Query 14332 AAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCG 14390 ||||||||| ||||| | | | | ||| |||| || || || || | |||||| | Sbjct 44157012 AAACATCTCTACAAACTCAGAGCCAGAA-ATTGAGAAAAATGGAACACCTGCTTCACCAG 44156954 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCAC 14450 | || || ||| || | || ||||| || ||||| || ||||| |||| Sbjct 44156953 CAATTGCCTTGGCAAGCAATGTTTTCCCAGTTCCTGGAGGACCAATAAGAAGAACACCCT 44156894 Query 14451 GTGGGATCCTGGCACC-ACTGC 14471 ||| |||| ||||| ||||| Sbjct 44156893 TTGGAATCCGTGCACCTACTGC 44156872 >seq16 Length=21371083 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| ||||||||||| ||||| || ||||| | |||||||| | ||||||||| | Sbjct 17436842 TCAAAACCATCCATCTCTGTCAAAAGCTGATTAAGAGTTTGTTCTCTTTCATCATTTCCT 17436783 Query 14210 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | ||| | | | |||| | || || || ||||||||||| | || || || Sbjct 17436782 CCTCCAATACCTGTTCCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAACACAATG 17436723 Query 14270 CATGGTTGATTTTC-ACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 ||||| ||| || || | ||| ||| | ||| || |||| | ||||| || || Sbjct 17436722 CATGGAGCATTCTCTTTGGCCTTCTTGAAA-AGATCACGAACTCGCGAAGCACCAACTCC 17436664 Query 14329 CACAAACATCTCCACAAA 14346 ||||||||||| ||||| Sbjct 17436663 AACAAACATCTCTACAAA 17436646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618125510843160