Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 158 1e-33 seq16 143 3e-29 seq67 131 2e-25 seq4 125 8e-24 seq15 91.5 2e-13 >seq3 Length=60060032 Score = 158 bits (174), Expect = 1e-33 Identities = 125/150 (83%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || ||||| ||| | |||||||| |||||||| |||||||||||||| ||| Sbjct 42479951 TCTTTCGCCGAGCGCCTCGTTGCATTTGCCGCCGTTGAGGGGATCTTCTTCTCTGGCTCC 42479892 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||| | || | |||||||||||||| ||||||||||| || ||| |||||||||| Sbjct 42479891 TTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCTCCAAC 42479832 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| |||||||| |||||||| |||||| Sbjct 42479831 GAGCTCATCTCTCGCGACGAGGGCCTCCAC 42479802 >seq16 Length=21371083 Score = 143 bits (158), Expect = 3e-29 Identities = 306/447 (68%), Gaps = 14/447 (3%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | || | ||| ||| || || || | || || || || || Sbjct 17436926 TCAAAGCGTCCGGGCCTCAGCAAAGCGGAATCTAGAATGTCTGCACGGTTTGTGGCTGCA 17436867 Query 9587 ATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 || || | |||||| || ||| || ||||||||||||||||||||||||| || |||| Sbjct 17436866 ATTACTATAATACCAGTATTTCCTT--CAAAACCATCCATCTCTGTCAAAAGCTGATTAA 17436809 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 9704 ||||||||| | ||||||||| || | ||| | | | |||| |||| || | Sbjct 17436808 GAGTTTGTTCTCTTTCATCATTTCCTCCTCCAATACCTGTTCCTCTTTGCCTTCCAACAG 17436749 Query 9705 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GCGAGCGACTTCAAAGAGA 9763 ||||||| ||||||| || || |||||||| ||| || | | ||| ||| ||| Sbjct 17436748 CATCAATTTCATCAACAAACACAATGCATGGAGCATTCTCTTTGGCCTTCTTGAAA-AGA 17436690 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 || || || ||| || || || |||||||||||||| ||||| | | | ||| || Sbjct 17436689 TCACGAACTCGCGAAGCACCAACTCCAACAAACATCTCTACAAACTCAGACCCTGAA-AT 17436631 Query 9824 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 || || || || ||| | ||| || ||||| || || || | |||||| || || Sbjct 17436630 TGAGAAAAATGGAACACCTGCTTCTCCTGCAATTGCCTTAGCAAGCAAAGTCTTCCCAGT 17436571 Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACTTCCAAAGT--A 9939 || || ||| | || || ||||| ||||| || || ||| | ||| | Sbjct 17436570 TCCCGGAGGACCAACAAGAAGAACACCTTTAGGAATACGAGCACCTACTGC---AGTAAA 17436514 Query 9940 TCTCTCAGGTTGCTTAAGAAAATCCAC 9966 ||| ||||||| ||| | ||| ||||| Sbjct 17436513 TCTTTCAGGTTTCTTCAAAAACTCCAC 17436487 Score = 116 bits (128), Expect = 4e-21 Identities = 219/318 (69%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 ||||||||||| || ||||| || || |||||||| || |||| ||||||||| | | Sbjct 21068975 AAACCATCCATTTCCGTCAAGAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCC--AC 21069032 Query 9674 ATAC--CACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | ||| || | || ||| | ||||| ||||||||||| || |||||||| |||| Sbjct 21069033 CTCCGAGACCGGCCCCCCGCTGCCTCCCCACCGCATCAATCTCGTCGATGAAGACAATGC 21069092 Query 9732 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 | || | ||||| | || || || | |||||| ||||| || || || || Sbjct 21069093 AGGG--GGCTTTCGACTTGGCCTTCTCGAACAAATCCCGGACACGAGAAGCTCCGACTCC 21069150 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 ||| || | |||||| || | | ||||| || || |||||| || | || || Sbjct 21069151 AACGAAGAGCTCCACGAATTCGGAGGCGGCGCACGAGAAGAAGGGCACCCCGGCCTCGCC 21069210 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 || | ||| ||||| || |||||||| || || || || ||| | | |||| || Sbjct 21069211 GGCGACGGCCCGGGCCAGGAGAGTCTTTCCGGTGCCGGGAGGACCGACCAAGAGGCAGCC 21069270 Query 9910 TCGTGGAATCTTGGCGCC 9927 | || ||||||||||| Sbjct 21069271 TTTGGGGATCTTGGCGCC 21069288 >seq67 Length=1088699 Score = 131 bits (144), Expect = 2e-25 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| ||| | || || | ||||||||| ||||||||||| || ||| Sbjct 292135 TCCTTCGCGGAGCGCCTCGTGGCCTTCTCTGCTGTTGAGGGGATCTTCTTCTCCGGCTCC 292076 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 ||||| | || | |||||||||||||| || |||||||| || || |||||||||| Sbjct 292075 TTCTGTTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTGACCTTCTCCAAC 292016 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||| || |||||||| |||||| Sbjct 292015 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 291986 >seq4 Length=57251647 Score = 125 bits (138), Expect = 8e-24 Identities = 237/340 (70%), Gaps = 14/340 (4%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCA 9613 ||| |||||||| | ||||| || || || || |||| || || || ||| || || Sbjct 44157249 ATCTAGGATATCTGCACGATTGGTGGCTGCAATTACAATTATTCCAGTATTTCCTT--CA 44157192 Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || ||||||||||| ||||| || || |||| ||||||||| | ||||||||| | | Sbjct 44157191 AACCCATCCATCTCAGTCAACAGCTGATTAAGAGTTTGTTCTCTCTCATCATTCCC--AC 44157134 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | || | | | |||| |||| || |||||||||||||| | || | ||||| Sbjct 44157133 CTCCAATTCCTGTTCCTCTTTGCCTTCCAACAGCATCAATCTCATCCACAAAAATGATGC 44157074 Query 9732 ATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 | || ||| || || |||| ||| ||||| || || || || || ||||| Sbjct 44157073 AAGGCGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGGACTCGTGAAGCACCTACACC 44157016 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9848 |||||||||||| ||||| | | | | ||| |||| || || || ||| | ||||| Sbjct 44157015 AACAAACATCTCTACAAACTCAGAGCCAGAA-ATTGAGAAAAATGGAACACCTGCTTCAC 44156957 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | ||||| || ||| || | || || || || ||||| Sbjct 44156956 CAGCAATTGCCTTGGCAAGCAATGTTTTCCCAGTTCCTGG 44156917 >seq15 Length=24314465 Score = 91.5 bits (100), Expect = 2e-13 Identities = 170/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || || || |||||||| || || |||| || || | || | || Sbjct 15395120 ATCAAGAATTTCTGGTCGGTTCGTCGCAGCAATTACAATAACTCCACTGTCCCCACTGAA 15395061 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| || || | |||||||| | |||||||| | ||||||||| || | | Sbjct 15395060 ACCATCCATTTCAGTAAGCAGTTGGTTCAATGTTTGTTCTCTTTCATCATTTCCT--CCT 15395003 Query 9676 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | | |||| | | |||| |||| || ||||||||||| ||||||||||| | ||| Sbjct 15395002 CCAATTCCAGTTCCTCTTTGCCTTCCTACTGCATCAATCTCGTCAATGAAGACCAGACAT 15394943 Query 9734 GGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACA 9793 || |||| | || | ||| | ||||| || | | || || ||||| ||| Sbjct 15394942 GGAGAATTTGCTGTTGCCTTATTAAACAAATCCCTAACTCTCGAAGCCCCTACACCGACA 15394883 Query 9794 AACATCTC 9801 |||||||| Sbjct 15394882 AACATCTC 15394875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582968724863640