Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3 214 2e-50 seq67 206 3e-48 >seq3 Length=60060032 Score = 214 bits (236), Expect = 2e-50 Identities = 410/596 (69%), Gaps = 15/596 (3%) Strand=Plus/Minus Query 59532 CTCGCGCCGAGCACCGCGCGTTTCACAACCTTTCCTATACGGTACCCGGATCTGTGGGCC 59591 ||||| |||| | ||| || || | | || || || || ||||| |||||| Sbjct 42480392 CTCGCCCCGAACCCCGATCGCTTTTCGATGTTCCCCATCCGCTACCCTCCGGTGTGGGAG 42480333 Query 59592 CTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGAC 59651 |||| ||||| || ||| || |||||| ||| ||||||| | || ||| || | || Sbjct 42480332 ATGTACAAGAAGGCCGTCGCCTCCTTCTGGACCGCCGAGGAGGTCGATCTCTCCAGCGAT 42480273 Query 59652 CTGAAGGATTGGG---ACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTG 59708 || | ||| ||| |||| |||||||| || |||||| |||| Sbjct 42480272 CTCCCCCACTGGCTCCACACCCTCACCACCGACGAGCGCCACTTCATCTCCCACATCCTC 42480213 Query 59709 GCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTT---TCC 59765 ||||||||||| || || || || || | || || | | | | ||| ||| Sbjct 42480212 GCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGTCCGCTTCATGTCC 42480153 Query 59766 AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTC 59824 || |||||||| ||||||| || | ||||||| | || ||| || |||| Sbjct 42480152 ---GACGTCCAGATCCCCGAGGCTCGCGCCTTCTACGGCTTCCAAATCGC-CATCGAGAA 42480097 Query 59825 TATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAA 59884 || |||||||||| |||||| ||| | |||| | ||||||||||||| || || Sbjct 42480096 CATTCACTCCGAGATGTACTCCCTCCTCCTCGAATCCTACATCAAGGATCCGGACGAAAA 42480037 Query 59885 GGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGC 59944 | | | || || || ||| | ||||| ||| || || | | | || || ||||||| Sbjct 42480036 AGATCGCCTTTTTCGCGCCGTCGAGACCGTCCCGGCGGTGACAAAGAAGGCCCAATGGGC 42479977 Query 59945 CATGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGC 60002 | | | |||||| ||||||| ||| || || || | || ||| | || ||||| | Sbjct 42479976 CCTCCGGTGGATCGAGTCCTCCGAG--TCTTTCGCCGAGCGCCTCGTTGCATTTGCCGCC 42479919 Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 || || || ||||||||||||||||| ||||| | || ||||||||||| |||||||| Sbjct 42479918 GTTGAGGGGATCTTCTTCTCTGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGT 42479859 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||||||||| || | |||||||||||||| || || || |||||||||||||| Sbjct 42479858 CTCATGCCGGGGCTCACCTTCTCCAACGAGCTCATCTCTCGCGACGAGGGCCTCCA 42479803 >seq67 Length=1088699 Score = 206 bits (228), Expect = 3e-48 Identities = 407/595 (68%), Gaps = 13/595 (2%) Strand=Plus/Minus Query 59532 CTCGCGCCGAGCACCGCGCGTTTCACAACCTTTCCTATACGGTACCCGGATCTGTGGGCC 59591 ||||| |||| | ||| || ||| | | || || || |||||||| | |||||| Sbjct 292576 CTCGCCCCGACCCCCGACCGCTTCTCGATGTTCCCCATCCGGTACCCCCAGGTGTGGGAG 292517 Query 59592 CTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGAC 59651 |||| ||||| || ||| || |||||| ||| ||||||| | |||||| ||| ||| Sbjct 292516 ATGTACAAGAAGGCCGTCGCCTCCTTCTGGACCGCCGAGGAGGTCGACCTCTCCGCCGAC 292457 Query 59652 CTGAAGGATTGGG---ACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTG 59708 || | ||| ||| |||| |||||||| || |||||| ||||| Sbjct 292456 CTCCCCCACTGGCTCCACACCCTCACCCCCGACGAGCGCCACTTCATCTCCCACGTCCTT 292397 Query 59709 GCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTT---TCC 59765 || |||||||| || || || || || | || || | | | ||| ||| Sbjct 292396 GCTTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGCCCGCTTCATGTCC 292337 Query 59766 AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCT 59825 || ||||||||||||||||| || | ||||||| | ||| || ||| Sbjct 292336 ---GACGTCCAGATTGCCGAGGCTCGCGCCTTCTACGGCTTCCAGATAGCCATCGAAAAC 292280 Query 59826 ATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAG 59885 ||||||||||||| ||| || || || | || | |||| || || || || || Sbjct 292279 ATCCACTCCGAGATGTATTCTCTTTTGCTGGAATCCTACATCAAAGACCCTGACGAAAAA 292220 Query 59886 GCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCC 59945 | | || || ||||| | |||||| ||| || || | || || | ||||| Sbjct 292219 GACCGCCTTTTTCGTGCTGTCGAGACGGTCCCGGCGGTGGCGAAGAAGGCCCAGTGGGCG 292160 Query 59946 ATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGC-G 60003 | |||||||| ||||||| | | || || || | || ||| | || || | ||| | Sbjct 292159 CTCCAGTGGATTGAGTCCTCGGAC-TCCTTCGCGGAGCGCCTCGTGGCCTTCTC-TGCTG 292102 Query 60004 TGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCC 60063 | || || ||||||||||| ||||| |||||| | || ||||||||||| ||||| |||| Sbjct 292101 TTGAGGGGATCTTCTTCTCCGGCTCCTTCTGTTCCATCTTCTGGCTCAAGAAGCGCGGCC 292042 Query 60064 TCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||||| |||| |||||||||||||| || ||||| |||||||||||||| Sbjct 292041 TCATGCCGGGGCTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCA 291987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548250119349840