Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 122 1e-22 seq18 93.3 5e-14 seq10 91.5 2e-13 seq2 91.5 2e-13 seq1 91.5 2e-13 seq15 89.7 6e-13 seq9 86.0 7e-12 seq91 82.4 8e-11 >seq3 Length=60060032 Score = 122 bits (134), Expect = 1e-22 Identities = 278/412 (67%), Gaps = 10/412 (2%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| || ||||||||||| | ||| ||||||| |||||||| ||| |||| Sbjct 42479845 AGCCCCGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCAGAGAAG 42479904 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC 74924 ||||| || || || ||||| || || ||||| | ||||| | ||||| | | Sbjct 42479905 AAGATCCCCTCAACGGCGGCAAATGCAACGAGGCGCTCGGCGAA---AGACTCGGAGGAC 42479961 Query 74925 ---ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 ||||| | ||||||| || || | | ||||| ||||| || |||| || Sbjct 42479962 TCGATCCACCGGAGGGCCCATTGGGCCTTCTTTGTCACCGCCGGGACGGTCTCGACGGCG 42480021 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACG-AGCTTGTCAATCATAAGTGAGTA 75040 | || |||| | || || || |||||||||| | || | || | | || ||||| Sbjct 42480022 CGAAAAAGGCGATCTTTTTCGTCCGGATCCTTGATGTAGGAT-TCGAGGAGGAGGGAGTA 42480080 Query 75041 CGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTG 75099 | |||| || ||||| |||| || ||| ||| | ||||||| | || ||||| | Sbjct 42480081 CATCTCGGAGTGAATGTTCTCGATG-GCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGG 42480139 Query 75100 CAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGG 75159 ||||| || || || | | ||| ||||| | |||||||||||| |||| Sbjct 42480140 GGATCTGGACGTCGGACATGAAGCGGACGGCGAGGTTCTCGAGGACGATGCCGTCGGAGG 42480199 Query 75160 CGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG 75211 ||||||| || || || | ||| ||||||||||| ||| ||||| Sbjct 42480200 CGGCGAAGAAGGCGAGGATGTGGGAGATGAAGTGGCGCTCGTCGGTGGTGAG 42480251 >seq18 Length=5282998 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 3580059 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3580000 Query 79684 TGAGCTACGAAAGCAAAA 79701 ||||||||||||||| || Sbjct 3579999 TGAGCTACGAAAGCAGAA 3579982 >seq10 Length=31890735 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 16940479 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 16940420 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 16940419 TGAGCTACGAAAGCA 16940405 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 23070668 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 23070609 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 23070608 TGAGCTACGAAAGC 23070595 >seq2 Length=65558141 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 27263103 CTGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 27263044 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 27263043 CTGAGCTATGAAAGC 27263029 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 59876263 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 59876322 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 59876323 TGAGCTACGAAAGCA 59876337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| || || |||| ||||||||||||||||||||||||||| ||||| Sbjct 4442769 TGCTTTCATTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4442828 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 4442829 TGAGCTATGAAAGCA 4442843 >seq1 Length=68435666 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 57637472 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 57637413 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 57637412 TGAGCTACGAAAGCA 57637398 >seq15 Length=24314465 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 12697399 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 12697458 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 12697459 TGAGCTACGAAAGC 12697472 >seq9 Length=38056896 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| || || |||| ||||||||||||||||||||||||||| ||||| Sbjct 32140866 TGCTTTCATTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 32140807 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 32140806 TGAGCTATGAAAGC 32140793 >seq91 Length=1077365 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||| ||| ||||| Sbjct 369489 TGCTTTCGTTGAGAGT-GAACTCAAGACCTCCCGCTTACTAAACGGGTGTTCTAACCAAC 369547 Query 79684 TGAGCTACGAAAGCAAAAGGGG 79705 |||||||||||||| ||||| Sbjct 369548 TGAGCTACGAAAGCTTGAGGGG 369569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546941974747800