Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq40061 515 5e-141 seq1 123 3e-23 >seq40061 Length=156973 Score = 515 bits (570), Expect = 5e-141 Identities = 709/989 (72%), Gaps = 2/989 (0%) Strand=Plus/Minus Query 176113 TTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTTGGTGTGCTC 176172 || ||| | ||| | |||| || | ||| | ||||| |||| ||||| ||||| | Sbjct 1137 TTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1078 Query 176173 ATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTT-ATCGTTGCATTTATTGCAGCACC 176231 ||||| || | | || || | | ||| || || | || || ||||| || || Sbjct 1077 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTCATTATCGCCTTCATTGCTGCTCC 1019 Query 176232 ACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAA 176291 || || ||||| || |||||||| |||||||| | || |||||||| ||||||||||| Sbjct 1018 TCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAA 959 Query 176292 CATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAAT 176351 || ||||| || || | | || | || || ||||| | || || || || || Sbjct 958 TATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGAT 899 Query 176352 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGT 176411 |||||||| ||| | ||||| || ||| | |||||||| || || || | || |||| Sbjct 898 ATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 839 Query 176412 ATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAG 176471 | |||||| | | ||| | | ||||||||| || | ||||||||||||| | | Sbjct 838 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 779 Query 176472 ACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGC 176531 || || |||||||||||||| ||||||||| || || || || | || || | || Sbjct 778 CCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 719 Query 176532 AGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCAT 176591 |||||| | |||| || | ||||||||| ||||||||||||||||||| | || || Sbjct 718 TGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 659 Query 176592 TTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCC 176651 || ||||| |||||||| ||| |||||||||| || || |||||||| || ||||| || Sbjct 658 ATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATCC 599 Query 176652 ATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGG 176711 ||| || ||| | || ||||| ||||| || || || || || ||| || ||||| || Sbjct 598 ATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 539 Query 176712 AAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGG 176771 | || || ||| | | || || || || ||||||||||| || || Sbjct 538 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGGG 479 Query 176772 TTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGG 176831 ||||| |||||| ||||| ||||| || || || || |||||||| || ||||| ||||| Sbjct 478 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 419 Query 176832 TCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGC 176891 || | |||||||| |||||| |||||| || || | | || |||||| | || Sbjct 418 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGGC 359 Query 176892 AGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAA 176951 || | || || || | |||||||| ||||| | ||| || | || ||||| ||||| Sbjct 358 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 299 Query 176952 CCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTAC 177011 ||| || |||||||| |||||||| ||||| | |||| ||| || || || Sbjct 298 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACAC 239 Query 177012 ATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGC 177071 |||| |||||| | || ||||| ||||||||||||||||| ||||| || |||||||| Sbjct 238 TTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGC 179 Query 177072 TCACAACTTCCCACTTGACCTTGCTGCTG 177100 |||||||||||| || ||||| ||||||| Sbjct 178 TCACAACTTCCCTCTAGACCTAGCTGCTG 150 Score = 163 bits (180), Expect = 3e-35 Identities = 201/272 (74%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 |||| |||| | || |||||||| || ||| || | |||||| | | ||||||||| Sbjct 121484 ACCTATAACTATTCAATATCCTTATGAAAAATCGATCACATCAGAGCGTTTCCGTGGTCG 121425 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || ||||| || ||||| || ||||| | |||||||| || Sbjct 121424 AATCCACTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGTGTTCGTGTATGCCCGAT 121365 Query 19415 CAATCTACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAA 19473 ||||||| || || |||||| | |||| | | | | || || ||| || | | Sbjct 121364 AGATCTACCCGTTGTAGATTGGAGATTTGAA-AGAGATATTAAAAAAAAACAATTGCTTA 121306 Query 19474 ATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAA 19533 ||||| || || ||||| | ||||| || || ||||| || || |||||||| |||| Sbjct 121305 ATTATAGTATTGATTTTGGGGTCTGTATATTTTGTGGTAATTGTGTCGAGTATTGTCCAA 121246 Query 19534 CAAACTGTCTATCCATGACAGAAGAATATGAA 19565 |||||||| |||| ||||| |||||||||||| Sbjct 121245 CAAACTGTTTATCAATGACTGAAGAATATGAA 121214 >seq1 Length=68435666 Score = 123 bits (136), Expect = 3e-23 Identities = 200/281 (71%), Gaps = 5/281 (2%) Strand=Plus/Plus Query 176822 GTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTT-CAC 176880 |||| ||||| || | |||||| | ||| || |||||| || || | |||| || Sbjct 3686462 GTTATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTC-ATTTCTTACAT 3686520 Query 176881 TTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACA 176940 |||||| | || | | || || || | |||||||| ||||| | || || | || Sbjct 3686521 TTCTTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACT 3686580 Query 176941 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTG-GTAA 176999 ||| | || ||||| || | |||||| |||||||| ||||| | ||| || | || Sbjct 3686581 ATGACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCG-TCAGAGTTG 3686638 Query 177000 AGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCA 177059 || || ||| ||| |||||| | || | || || |||||||||||||| ||||| Sbjct 3686639 TGTTATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCA 3686698 Query 177060 CGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 || |||||||||||||||||| | || ||||| ||||||| Sbjct 3686699 TGAACGTAATGCTCACAACTTCTCTCTAGACCTAGCTGCTG 3686739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603192192635520