Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq6 113 4e-20 seq1 113 4e-20 seq5 107 2e-18 seq14 91.5 1e-13 seq2 86.0 5e-12 >seq6 Length=44357769 Score = 113 bits (124), Expect = 4e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| || ||||||||||| || || || |||| || ||||| Sbjct 21861003 TGGAGGGTGGACTCCTTTTGAATGTTATAATCGGCGAGGGTGCGGCCGTCTTCCAGCTGC 21861062 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || |||||||||||||| | ||| | || |||||| ||| ||| || Sbjct 21861063 TTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCTTTATCCTGGATCTTG 21861122 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | ||| || |||||| || |||| ||||| | || || || Sbjct 21861123 GCCTTGA-CGTTGTCGATCGTGTCCGACGACTCGACCTCCAAAGTGATGGTCTTGCCGGT 21861181 Query 39261 CAGCGTTTTAACAAAGATTTGCATCT 39286 || || || || ||||| ||||||| Sbjct 21861182 GAGGGTCTTGACGAAGATCTGCATCT 21861207 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | ||||| ||| || || ||||||||| || ||||||||||| Sbjct 21860751 CCTCCACGGAGGCGGAGCACCAGATGAAGAGTAGACTCTTTTTGGATGTTATAATCGGCG 21860810 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC 39170 || || || |||| ||||| || || || || || || |||||||||||||| Sbjct 21860811 AGGGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGGTC 21860863 >seq1 Length=68435666 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | ||| | |||||| || || || ||| || || |||||||| ||||| Sbjct 29766516 CCTCCCCTAAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATATTATAGTCGGCG 29766575 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | |||| ||||||||||| || || || || || | ||||||||| | ||| Sbjct 29766576 AGGGTCCTGCCGTCTTCAAGCTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 29766635 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | || ||| |||||| ||| ||| |||| ||| | | | ||| || ||||| || Sbjct 29766636 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCAATCGTGTCCGAGGACTCGAC 29766694 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| |||| || || || || || || ||||| |||||| Sbjct 29766695 CTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCATC 29766743 >seq5 Length=51955539 Score = 107 bits (118), Expect = 2e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || || ||||| ||||| || || || |||| || ||||| Sbjct 10328017 ATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTG 10327958 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||| || || || || || ||||||||||| | ||| | || |||||||||| ||| || Sbjct 10327957 TTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCTTTGTCCTGGATCTT 10327898 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 |||| ||| | | | ||| || ||||| || || | ||||| | || |||| Sbjct 10327897 GGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCG 10327839 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTT 39287 |||| || || || ||||| |||||||| Sbjct 10327838 TCAGAGTCTTCACGAAGATCTGCATCTT 10327811 >seq14 Length=24379743 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || ||||| || ||||| || || || | || || ||||| Sbjct 6042248 TGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGC 6042189 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||| || || ||||| |||||||| || |||||| | || ||| |||||| ||| || Sbjct 6042188 TTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGG-ATGCCCTCCTTGTCCTGGATCTT 6042130 Query 39201 CTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 |||| ||| | | | || || ||||| || || | ||||| | || || | Sbjct 6042129 GGCCTTGA-CGTTGTCGATTGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGG 6042071 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || || ||||||||||| |||||||| Sbjct 6042070 TGAGGGTCTTAACAAAGATCTGCATCTT 6042043 >seq2 Length=65558141 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || |||||||| || || || |||| || ||||| Sbjct 62822524 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 62822583 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || || || || ||||||||||| |||||| | || ||| |||||| ||| || Sbjct 62822584 TTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGTGGG-ATGCCCTCCTTGTCCTGGATCTT 62822642 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 |||| ||| | | | || ||| ||||| || || | || ||| | || |||| Sbjct 62822643 GGACTTGA-CGTTGTCGATGGTGTCGGAGGACTCTACCTCGAGGGTAATAGTCTTCCCCG 62822701 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || || || || ||||| ||||| || Sbjct 62822702 TGAGGGTCTTCACGAAGATCTGCATGTT 62822729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429335877179693