Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq12 122 6e-23 seq14 111 1e-19 seq6 104 2e-17 seq389 100 2e-16 seq2 100 2e-16 seq160 96.9 2e-15 seq17 95.1 8e-15 seq29159 91.5 1e-13 >seq12 Length=28800575 Score = 122 bits (134), Expect = 6e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || |||||||| || |||||||| | | Sbjct 14045511 ATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACGATCACCCTGGAAGTTGAGAGCTCT 14045570 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || ||||| || || | || |||||||| Sbjct 14045571 GACACAATTGATAATGTGAAGGCTAAGA-TTCAGGACAAGGAGGGCATTCCCCCAGATCA 14045629 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || ||||||||||| || | |||||||| | ||| ||||| Sbjct 14045630 GCAGAGGCTCATCTTTGCTGGAAAACAACTGGAGGATGGCCGCACTTTGGCCGACTACAA 14045689 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| ||||||||||| ||| Sbjct 14045690 CATCCAAAAAGAGTCGACA 14045708 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| || ||||| || || || ||||| || |||||||| | || Sbjct 14045055 ATGCAGATCTTTGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAAGTTGAGAGCTCG 14045114 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | || || || || | || || || || Sbjct 14045115 GACACCATTGATAATGTGAAGGCCAAGA-TCCAGGATAAGGAGGGCATCCCCCCTGACCA 14045173 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||||||||| || || | |||||||| | || ||||| Sbjct 14045174 GCAGAGGCTCATCTTTGCTGGCAAACAACTTGAGGATGGCCGCACTTTGGCTGACTACAA 14045233 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| || |||||||| ||| Sbjct 14045234 CATCCAGAAAGAGTCAACA 14045252 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || |||||||| ||||| || | || Sbjct 14046604 ATGCAGATTTTTGTGAAGACCCTGACTGGGAAGACCATCACTCTGGAAGTGGAGAGCTCG 14046663 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || || ||||| ||||| | || || ||||| Sbjct 14046664 GACACCATTGATAATGTCAAGGC-CAAGATCCAGGACAAGGAAGGGATCCCCCCTGATCA 14046722 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || || || || | || || | | || ||||| Sbjct 14046723 GCAGAGGCTTATTTTTGCCGGGAAGCAGCTTGAGGATGGGCGTACCCTGGCGGACTACAA 14046782 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 14046783 CATCCAAAAGGAGTCCAC 14046800 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| || |||||||| | | Sbjct 14045283 ATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACCATCACCCTGGAAGTTGAGAGCTCT 14045342 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || ||||| || || | || || || || Sbjct 14045343 GACACAATTGATAATGTGAAGGCTAAGA-TTCAGGACAAGGAGGGCATCCCCCCTGACCA 14045401 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||||||||| || || | || ||||| | || ||||| Sbjct 14045402 GCAGAGGCTCATTTTTGCTGGCAAACAACTTGAGGATGGCCGAACTTTGGCTGACTACAA 14045461 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGG 23826 || || |||||||| ||| | || | ||| || || Sbjct 14045462 TATCCAGAAAGAGTCAACACTCCACCTTGTTCTACGG 14045498 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| || || || || || || |||||||| |||||||| | | Sbjct 14032696 ATGCAGATCTTTGTTAAGACTCTGACTGGCAAGACCATCACTCTTGAAGTTGAAAGCTCT 14032755 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | | ||||| || || | || ||||| || Sbjct 14032756 GATACAATCGATAATGTGAAGGCCAAGA-TCCAAGACAAGGAGGGCATCCCCCCAGACCA 14032814 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || || ||||||||||| || || || | ||||| | | || ||||| Sbjct 14032815 ACAGAGGCTTATTTTCGCCGGCAAACAGCTTGAGGATGGTCGCACACTGGCTGACTACAA 14032874 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || |||||||| ||| | ||| | ||| Sbjct 14032875 CATTCAGAAAGAGTCGACACTCCATCTTGTT 14032905 >seq14 Length=24379743 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||| | || ||||| || || || || ||||| || || ||||| | | Sbjct 11038988 ATGCAGATCTTCATCAAGACCCTTACAGGGAAGACTATCACCCTTGAGGTTGAGAGCTCA 11039047 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| |||| | || || || || || | || || ||||| Sbjct 11039048 GACACCATTGATAATGTGAAAGCAAAGA-TTCAGGATAAGGAGGGCATCCCACCTGATCA 11039106 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | |||||||| || || || || || || | ||||| |||| |||||||| Sbjct 11039107 GCAGCGCCTGATATTTGCTGGGAAGCAGCTTGAGGATGGTCGCACATTAGCAGATTACAA 11039166 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||||||||| Sbjct 11039167 CATCCAAAAAGAGTCCAC 11039184 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || || || || || ||||||||| | || || || | | Sbjct 11039215 AATGCAGATCTTTGTCAAGACTCTGACAGGGAAGACGATCACTTTGGAGGTGGAGAGCTC 11039274 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || |||| | || ||||| ||||| | || ||||| | Sbjct 11039275 TGACACCATTGATAATGTCAAGGCAAAGA-TTCAGGACAAGGAAGGAATCCCTCCAGACC 11039333 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| | || ||||| || || ||||| || || | |||||| | | ||||||| Sbjct 11039334 AGCAGCGTCTTATCTTTGCTGGAAAGCAACTTGAGGATGGACGCACGCTGGCAGATTACA 11039393 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || || || || Sbjct 11039394 ACATTCAGAAGGAATCTAC 11039412 >seq6 Length=44357769 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| | || || || | || Sbjct 21860977 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGAGCTCG 21860918 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| || || |||||| | ||||| || || Sbjct 21860917 GACACGATCGACAACGTCAAGGCCAAGATTCAAGATAAGGAAGGTATTCCGCCGGACCAG 21860858 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| || ||||| || |||| ||||| | | |||||| ||| Sbjct 21860857 CAGCGTCTGATCTTCGCCGGAAAGCAACTTGAGGACGGTCGCACCCTCGCCGATTATAAC 21860798 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||||||||| || Sbjct 21860797 ATCCAAAAAGAGTCTAC 21860781 >seq389 Length=334988 Score = 100 bits (110), Expect = 2e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| || ||| |||| ||||||||||| | || || || || || ||||| ||||| Sbjct 298380 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTCGCTGGAAAACAGTTGGAA 298439 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || || || | ||||||||||| ||||||||||| ||||| ||| | |||||| Sbjct 298440 GATGGCCGAACCTTGGCTGATTACAACATTCAAAAAGAGTCAACATTGCATCTGGTTTTA 298499 Query 23824 AGG 23826 ||| Sbjct 298500 AGG 298502 >seq2 Length=65558141 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||||||||| || || || || ||||| || || ||| Sbjct 62822729 AACATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACTATTACCCTCGAGGTAGAGTCC 62822670 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| || || | || ||||| Sbjct 62822669 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCACCAGAC 62822610 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || || ||||| || || || || |||| ||||| | | ||||||| Sbjct 62822609 CAGCAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGATTAC 62822550 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 62822549 AACATCCAGAAGGAGTCCAC 62822530 >seq160 Length=614534 Score = 96.9 bits (106), Expect = 2e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| || ||| |||| ||||||||||| | || || ||||| || || || ||||| Sbjct 340135 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTTGCTGGAAAGCAGTTGGAA 340194 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || || ||| ||||||||||| ||||||||||| ||| | ||| | |||||| Sbjct 340195 GATGGTCGAACCCTAGCTGATTACAACATTCAAAAAGAGTCAACACTGCATCTGGTTTTA 340254 Query 23824 AGG 23826 ||| Sbjct 340255 AGG 340257 >seq17 Length=6372654 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||||||||| || || ||||| ||||| || || || | Sbjct 622186 ATGCAGATCTTCGTGAAAACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCTTCC 622245 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || |||||||| Sbjct 622246 GACACAATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 622305 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || ||||| || || || || || | || || | | ||| |||||| Sbjct 622306 CAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGGACCCTCGCCGACTACAAC 622365 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 622366 ATTCAGAAGGAGTCCAC 622382 >seq29159 Length=2312 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| || |||||||| | | Sbjct 1990 ATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACCATCACCCTGGAAGTTGAGAGCTCT 2049 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | || ||||| || || | || || || || Sbjct 2050 GATACGATTGATAATGTGAAGGCTAAGA-TTCAGGACAAGGAGGGCATCCCTCCCGACCA 2108 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||||||||| || || | |||||||| | || ||||| Sbjct 2109 GCAGAGGCTCATTTTTGCTGGCAAACAACTTGAGGATGGTCGCACTTTGGCTGACTACAA 2168 Query 23790 CATACAAAAAGAGTCCACA 23808 || || |||||||| ||| Sbjct 2169 TATCCAGAAAGAGTCAACA 2187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337844569030988