Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq389 86.0 5e-12 seq71 84.2 2e-11 >seq389 Length=334988 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 ||||| |||| ||||| ||||| ||||||||||| |||||||| |||| ||| | | Sbjct 298501 CTTAAAACCAGATGCAATGTTGACTCTTTTTGAATGTTGTAATCAGCCAAGGTTCGGCCA 298442 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 |||||||| ||||| || || | || | |||||||| ||| ||| | || || ||| Sbjct 298441 TCTTCCAACTGTTTTCCAGCGAAAATCAATCTTTGTTGATCTGGGGGTATACCCTCCTTG 298382 Query 101144 TC 101145 || Sbjct 298381 TC 298380 >seq71 Length=983643 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/124 (76%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA- 101082 || || |||| ||| | |||||| |||||||||||||||||||| || ||| || || Sbjct 265281 CTCAAAACCAGGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGC--TAGGGTTCGAC 265224 Query 101083 -ATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTT 101141 ||||||||| ||||| || ||| | || | |||||| || ||| ||| | || || | Sbjct 265223 CATCTTCCAACTGTTTCCCAGCAAAAATCAACCTTTGCTGATCTGGGGGTATCCCCTCCT 265164 Query 101142 TGTC 101145 |||| Sbjct 265163 TGTC 265160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409460785802799