Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq7 111 2e-19 seq3 105 9e-18 seq2 104 3e-17 >seq7 Length=43454766 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||||||||||| | |||||| |||||| || || |||||| ||| ||||||| Sbjct 13984333 CTCTCTTTCATATTTCATGTATAGCTTTTCAAAATCTTCACCCCAACAGTCAGCCAATCC 13984274 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || |||||| ||||| | || |||||| | |||| | | || | | ||| || Sbjct 13984273 TGGAGCTTCATTAGGGCAAAACAGTGACCACTGTCCATTATTTTGGACCCTCTCCATGAA 13984214 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||| ||||| || ||| ||| |||||||| | ||||||||||| Sbjct 13984213 GAGATCAGGAATCCAGAGCGCATAAAAAAGATCTCGTGCCCTATGTTCTTC 13984163 Score = 105 bits (116), Expect = 9e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | |||| | || | || |||||||| ||| || Sbjct 13983412 CCCCCTTGATCAACATAACGAGCAGTATCATTAAACACCCGCAGCATTGGAACAATGCCA 13983353 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||| ||||||||||| ||| ||||||||| || | || || |||||| || || Sbjct 13983352 TTAGAAGTTCCATTTGTCCCACGAATATAACTGCCTGTGGCACGTATATTATGAACTGAA 13983293 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || ||| ||| | ||| || ||||| || || || || Sbjct 13983292 ACACCAATTCCTCCAGCAGACTTGCTTATGACAGCACATTCCTTCAAAGTGTCATATATT 13983233 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| ||||| ||||| ||||| | ||| || ||||| Sbjct 13983232 CCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCT 13983192 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| ||||| ||||||||||| ||||| ||||| || ||||| || ||| | | || Sbjct 13983080 AGTGCCTGCGTTAAATAATGTTGGAGAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 13983021 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 |||||| | | | || || || || | || ||||| || || || | ||||| Sbjct 13983020 ATATGTTCTGAGAACAGAATCAATATCATTCTTGTGGATTCCAACAGCAACTCTCATCAG 13982961 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| || || || ||||| || || | | |||||| | ||| ||| | || | Sbjct 13982960 CATGTGTTGTGGCCTTTCTACTACTTTTCCAGAAACTTTCAAGAGGTAAGATCTCTCGAG 13982901 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||| ||||||||||| |||| || |||||| || || ||||| || Sbjct 13982900 AGTCTTAAAACCAAAGTAGTCATAATCAAAGTCCCTATCATAAATTAT 13982853 >seq3 Length=60060032 Score = 105 bits (116), Expect = 9e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | |||| | || | || ||| || | ||| || Sbjct 21218291 CCCCCTTGATCAACATAACGAGCAGTATCATTAAACACCCGCAGCATCGGCACAATGCCA 21218232 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || ||||||||||| ||| ||||||||| || | ||||| |||||| || || Sbjct 21218231 TTTGAAGTTCCATTTGTCCCACGAATATAACTACCTGTGGCGCGTATATTATGAACTGAA 21218172 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || ||||||||||| ||| ||| | ||| || |||| || || ||||| Sbjct 21218171 ACACCAATTCCTCCTGCAGACTTGCTTATGATAGCACATTCCTTCAGAGTGTCATAGATT 21218112 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| ||||| ||||| ||||| | ||| |||||||| Sbjct 21218111 CCCTCAATACTATCATCTTTCATGCAGATAAGGAAACAGCT 21218071 Score = 95.1 bits (104), Expect = 2e-14 Identities = 126/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||||||||||||| || || ||| |||||| || || ||||| |||| |||| || Sbjct 21219277 CTCTCTTTCATATCTTGTGTACAGCTTTTCAAAATCTTCACCCCAGCAATCAGCCAAACC 21219218 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCAT--CTTCCTTAACTCGTTTCATA 78014 || |||||| ||||| | || |||||| | |||| ||| | || | | ||| Sbjct 21219217 TGGAGCTTCATTAGGGCAAAACAGTGACCACTGTCCATAACTT--TGGACCCTCTCCATG 21219160 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||||| ||||| || ||| ||| |||||||| | ||||| ||||| Sbjct 21219159 AAGAGATCAGGAATCCAGAGTGCATAAAAAAGATCTCGTGCCCTATGCTCTTC 21219107 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| ||||||||||||||||| || || ||||| || ||||| || ||| | | || Sbjct 21217964 AGTGCCTGCATTAAATAATGTAGGGGAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 21217905 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 ||||||| | | | || || || || | ||| || ||||| || || || | ||||| Sbjct 21217904 GTATGTTCTGAGAACAGAATCAATATCATCCTTG-TGGATTCCAACAGCAACTCTCATCA 21217846 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 |||| || || || || || || || | | |||||| | || ||| | || | Sbjct 21217845 ACATGTGTTGTGGCCTCTCTACTACTTTTCCAGAAACTTTCAAGAGATAAGATCTCTCAA 21217786 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||| |||||||||||||| | || |||||| || || ||||| || Sbjct 21217785 GAGTCTTAAAACCAAAATAATCATAATCAAAGTCCCTGTCATAAATTAT 21217737 >seq2 Length=65558141 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | |||| |||| ||||||||||||| || || Sbjct 13677194 CCCCCTTGATCAACATAACGAGCAGTATCATTAAAAACCCTCAACATTGGAACGATGCCA 13677253 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| |||||||| ||| |||||||| ||| |||| |||||||| | ||| Sbjct 13677254 TTGGATGTCCCATTTGTCCCACGGATATAACTACCAGTTGCACGAATATTGTGAGCAGAT 13677313 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 || || | |||||| || || ||| | ||| || || || ||||| || || Sbjct 13677314 ATGCCAACTCCTCCAGCAGATTTGCTTATAACAGCACACTCCTTTAAAGTATCATATATG 13677373 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| || || ||||| ||||| || | || |||||| Sbjct 13677374 CCCTCAATGCTATCATCTTTCATGCAAACCAAGAAGCAGCTA 13677415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694320935915040