Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 131 2e-25 seq7 120 4e-22 seq3 111 2e-19 >seq2 Length=65558141 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | |||| |||| ||||||||||||| ||||| Sbjct 13677194 CCCCCTTGATCAACATAACGAGCAGTATCATTAAAAACCCTCAACATTGGAACGATGCCA 13677253 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||| ||| |||||||| ||| |||||||||||| | |||| Sbjct 13677254 TTGGATGTCCCATTTGTCCCACGGATATAACTACCAGTTGCACGAATATTGTGAGCAGAT 13677313 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | ||| | |||||| || ||| || | |||||| || || || ||||| ||| Sbjct 13677314 ATGCCAACTCCTCCAGCAGATTTGCTTATAACAGCACACTCCTTTAAAGTATCATATATG 13677373 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| || |||||||| ||||| || | || |||||| Sbjct 13677374 CCCTCAATGCTATCATCTTTCATGCAAACCAAGAAGCAGCTA 13677415 >seq7 Length=43454766 Score = 120 bits (132), Expect = 4e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | |||| | || | || |||||||| |||||| Sbjct 13983412 CCCCCTTGATCAACATAACGAGCAGTATCATTAAACACCCGCAGCATTGGAACAATGCCA 13983353 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| || |||||||| ||| ||||||||| || ||||| |||||| || || Sbjct 13983352 TTAGAAGTTCCATTTGTCCCACGAATATAACTGCCTGTGGCACGTATATTATGAACTGAA 13983293 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || || || | |||||| ||||| |||||||| || Sbjct 13983292 ACACCAATTCCTCCAGCAGACTTGCTTATGACAGCACATTCCTTCAAAGTGTCATATATT 13983233 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| ||||||||||| ||||| | ||| || ||||| Sbjct 13983232 CCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCT 13983192 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||||| | |||| | |||||| || || |||||| ||| |||| || Sbjct 13984333 CTCTCTTTCATATTTCATGTATAGCTTTTCAAAATCTTCACCCCAACAGTCAGCCAATCC 13984274 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| |||||| || || | || |||||||| |||| | | |||| | ||| || Sbjct 13984273 TGGAGCTTCATTAGGGCAAAACAGTGACCACTGTCCATTATTTTGGACCCTCTCCATGAA 13984214 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||||| ||||| || ||| ||| |||||||| | ||| ||||||| Sbjct 13984213 GAGATCAGGAATCCAGAGCGCATAAAAAAGATCTCGTGCCCTATGTTCTTC 13984163 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| ||||| ||||| ||||| ||||| |||||||||||||| || ||| | | || Sbjct 13983080 AGTGCCTGCGTTAAATAATGTTGGAGAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 13983021 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||| | ||| | || ||||| | || ||||| ||||| || | ||||| Sbjct 13983020 ATATGTTCTGAGAACAGAATCAATATCATTCTTGTGGATTCCAACAGCAACTCTCATCAG 13982961 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || || || | |||||| || | | |||||| | ||| ||| | || | Sbjct 13982960 CATGTGTTGTGGCCTTTCTACTACTTTTCCAGAAACTTTCAAGAGGTAAGATCTCTCGAG 13982901 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||| ||||||||||| |||| || |||||| || || ||||| || Sbjct 13982900 AGTCTTAAAACCAAAGTAGTCATAATCAAAGTCCCTATCATAAATTAT 13982853 >seq3 Length=60060032 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | |||| | || | || ||| || | |||||| Sbjct 21218291 CCCCCTTGATCAACATAACGAGCAGTATCATTAAACACCCGCAGCATCGGCACAATGCCA 21218232 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || |||||||| ||| ||||||||| || || || |||||| || || Sbjct 21218231 TTTGAAGTTCCATTTGTCCCACGAATATAACTACCTGTGGCGCGTATATTATGAACTGAA 21218172 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||||||||| || || | |||||| |||| ||||||||||| Sbjct 21218171 ACACCAATTCCTCCTGCAGACTTGCTTATGATAGCACATTCCTTCAGAGTGTCATAGATT 21218112 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| ||||||||||| ||||| | ||| |||||||| Sbjct 21218111 CCCTCAATACTATCATCTTTCATGCAGATAAGGAAACAGCT 21218071 Score = 109 bits (120), Expect = 8e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| ||||||||||| |||||||| || |||||||||||||| || ||| | | || Sbjct 21217964 AGTGCCTGCATTAAATAATGTAGGGGAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 21217905 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||||||| | ||| | || ||||| | ||| || ||||| ||||| || | ||||| Sbjct 21217904 GTATGTTCTGAGAACAGAATCAATATCATCCTTG-TGGATTCCAACAGCAACTCTCATCA 21217846 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 |||| || || || | ||||| || | | |||||| | || ||| | || | Sbjct 21217845 ACATGTGTTGTGGCCTCTCTACTACTTTTCCAGAAACTTTCAAGAGATAAGATCTCTCAA 21217786 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||| |||||||||||||| | || |||||| || || ||||| || Sbjct 21217785 GAGTCTTAAAACCAAAATAATCATAATCAAAGTCCCTGTCATAAATTAT 21217737 Score = 104 bits (114), Expect = 3e-17 Identities = 128/173 (74%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||||||||||||| ||| || | | |||||| || || ||||| |||| ||||||| Sbjct 21219277 CTCTCTTTCATATCTTGTGTACAGCTTTTCAAAATCTTCACCCCAGCAATCAGCCAAACC 21219218 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCAT--CTTCCTTAACCCGTTTCATA 76609 ||| |||||| || || | || |||||||| |||| ||| | |||| | ||| Sbjct 21219217 TGGAGCTTCATTAGGGCAAAACAGTGACCACTGTCCATAACTT--TGGACCCTCTCCATG 21219160 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||||||| ||||| || ||| ||| |||||||| | ||| | ||||| Sbjct 21219159 AAGAGATCAGGAATCCAGAGTGCATAAAAAAGATCTCGTGCCCTATGCTCTTC 21219107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712577389187520