Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq40061 668 0.0 seq1 185 1e-41 seq14 156 5e-33 seq155 89.7 6e-13 >seq40061 Length=156973 Score = 668 bits (740), Expect = 0.0 Identities = 746/991 (75%), Gaps = 4/991 (0%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 ||||||| | ||||| ||||||||| | ||||| || || | || ||||| || | Sbjct 1138 CTTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTT 1079 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 |||||| || || | ||| | ||||| |||| ||||| | |||||| | ||||||| Sbjct 1078 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTCATTATCGCCTTCATTGCTGCTC 1020 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || || || || || || || ||||| ||| |||| || || | |||||||||| Sbjct 1019 CTCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACA 960 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 | || ||||||||||| || |||| |||| || || || | || || ||||| | Sbjct 959 ATATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGA 900 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 | |||||||| ||||| | ||||||||| | || || || |||||||| | || | | Sbjct 899 TATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTG 840 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 | | |||||| | |||| || || ||||||||||||||||||||| | || || Sbjct 839 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 780 Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCG 183613 | || ||||||||||||||||| |||||| ||| || |||||||| ||||| || | Sbjct 779 GCCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 720 Query 183614 CTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTA 183673 |||| ||| || |||| ||| | |||||||| ||| |||||||||||| | || | Sbjct 719 CTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 660 Query 183674 TCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 183733 | ||| || || |||| ||| |||| ||||| || || ||||||||||| ||||| | Sbjct 659 TATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATC 600 Query 183734 CCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACG 183793 | || |||||| ||||||| |||||||| ||||| || || || |||||||| ||||| | Sbjct 599 CATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 540 Query 183794 GTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTAT 183852 |||| |||| || || | | | | || | ||||||||||| || || || Sbjct 539 GTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCG 481 Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912 ||||||| ||||||||||| ||||| || || || || || ||||||||||| || ||| Sbjct 480 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 421 Query 183913 GGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTT 183972 || || |||||||||| |||||| || |||||||||||||| | || |||||| | Sbjct 420 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTG 361 Query 183973 GCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTT 184032 ||||||||||| || || || |||||||| |||||| | ||| |||| |||||||| || Sbjct 360 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 301 Query 184033 AACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAAC 184092 ||||| |||||||| || |||||||| || | |||| |||| |||||||| | ||| Sbjct 300 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAAC 241 Query 184093 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAAT 184152 || ||||| || | |||| |||||| ||||| |||||||| ||||| || |||||| Sbjct 240 ACTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAAT 181 Query 184153 GCTCACAACTTCCCTCTCGACCTTGCTGCTG 184183 ||||||||||||||||| ||||| ||||||| Sbjct 180 GCTCACAACTTCCCTCTAGACCTAGCTGCTG 150 Score = 509 bits (564), Expect = 2e-139 Identities = 707/985 (72%), Gaps = 4/985 (0%) Strand=Plus/Plus Query 185991 GACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTTCCCACTGCTTATATGGCA 186050 ||||| || || ||||| ||||||||||| || | || ||||| ||||||| | || Sbjct 33106 GACCGTTTCGTTTTTGTAGGCTGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 33165 Query 186051 ATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCG 186110 | || || ||| |||| || ||||| ||||| || ||||||||||| || ||||| Sbjct 33166 TTAGGAGGTTGGTTTACAGGTACAACTTTTGTAACTTCATGGTATACCCATGGATTGGCC 33225 Query 186111 TCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCT 186170 ||| || | || ||| ||||| | || || ||||| || |||||||| | | Sbjct 33226 AGTTCCTATTTGGAAGGTTGCAATTTCTTGACCGCTGCAGTTTCCACTCCTGCGAATAGT 33285 Query 186171 ATGGGTCATTCTCTTCTT-CTACTTTGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTG 186229 | | ||||| ||| || ||||| ||||| |||||| | ||||| ||| | | || || Sbjct 33286 TTAGCACATTC-CTTGTTGCTACTATGGGGCCCTGAGGCACAAGGGGATTTTACTCGTTG 33344 Query 186230 GTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGG 186289 || ||| | || || || |||| |||||| || ||||| || | || | || ||||| Sbjct 33345 GTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGTTTTCGGACTAATAGG 33404 Query 186290 TTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGTATCCGTCCATACAATGCCA 186348 ||| ||| | || || || ||| | ||| ||| || | || || || ||||| | Sbjct 33405 TTTTATGTTACGTCAATTCGAACTTGCTCGATCT-GTGCAATTGCGACCTTATAATGCAA 33463 Query 186349 TTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGAC 186408 | || || |||| ||| || ||||| |||||| ||||||||| || || || || || | Sbjct 33464 TCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGGTC 33523 Query 186409 AGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGT 186468 | || |||||||| || ||| ||||| || ||||| || ||| ||||| | | | Sbjct 33524 AATCTGGTTGGTTCTTTGCGCCCAGTTTTGGCGTAGCAGCTATATTTCGATTCATCCTCT 33583 Query 186469 TCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTA 186528 || ||||||| || || || ||||||||||| ||||| || |||||||| || || || Sbjct 33584 TCTTCCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAG 33643 Query 186529 TCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATG 186588 | | || | ||||||||| | || || ||||||| ||| |||||||||||| | | | Sbjct 33644 TATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCG 33703 Query 186589 AAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCT 186648 ||||||| || ||||| |||||| || || | | || |||| ||||| || | Sbjct 33704 AAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTT 33763 Query 186649 ATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATA 186708 |||| ||||||||||| ||| | || ||||| || ||||| || |||| ||| ||||| Sbjct 33764 ATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATA 33823 Query 186709 AGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCA 186768 | |||||| | |||||||| ||||| ||||| || || | ||| | |||| | | Sbjct 33824 AACGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTC 33883 Query 186769 TTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGA 186828 |||| | | || || ||||| ||||| ||||| |||||||| || || || | Sbjct 33884 TTGGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCGTTTCCCAAGAAATCC 33943 Query 186829 GAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAATATCCTATTGAATGAAG 186888 | ||||| || |||||||| || ||||| ||||| ||||| |||||||| || || |||| Sbjct 33944 GTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTCTTAAACGAAG 34003 Query 186889 GTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAAACTTTGTATTTCCTGAAG 186948 || | ||||| |||||||| | |||||| || ||||||||| || |||| ||||| | Sbjct 34004 GTATTCGTGCTTGGATGGCGGCTCAGGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 34063 Query 186949 AAGTGTTGCCAAGAGGCAACGCTCT 186973 | || | || | || |||||||| Sbjct 34064 AGGTTCTACCCCGTGGAAACGCTCT 34088 >seq1 Length=68435666 Score = 185 bits (204), Expect = 1e-41 Identities = 210/278 (76%), Gaps = 3/278 (1%) Strand=Plus/Plus Query 183907 TACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTT-CACTT 183965 || ||||| || |||||||| | ||| || || |||||||||| || |||| || || Sbjct 3686464 TATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATT-TCTTACATTT 3686522 Query 183966 CTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTAT 184025 |||| | |||| |||||| || || | |||||||| |||||| | || |||| ||||| Sbjct 3686523 CTTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTAT 3686582 Query 184026 GGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGT 184085 | | |||||||| |||| ||| || |||||||| || | |||| |||| || |||| Sbjct 3686583 GACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTGT 3686641 Query 184086 CCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGA 184145 | || || ||| | || | |||| | ||| |||||| |||||||| ||||| || Sbjct 3686642 TATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGA 3686701 Query 184146 GCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTG 184183 |||||||||||||||||| |||| ||||| ||||||| Sbjct 3686702 ACGTAATGCTCACAACTTCTCTCTAGACCTAGCTGCTG 3686739 Score = 150 bits (166), Expect = 2e-31 Identities = 313/461 (68%), Gaps = 5/461 (1%) Strand=Plus/Plus Query 183716 ACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCT-TCGGTGGTTCT 183774 |||||||||| |||| || | |||||| |||||| || |||| | | | |||| Sbjct 30149905 ACAACATCCTCGTGCATCCATCTCACATGTTGGGTGGAGCCGGTGAATATAGCAACTTCT 30149964 Query 183775 CTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAG 183834 | |||||||| || | ||||| ||| || | | || | ||||||||| | Sbjct 30149965 -TATTCAGTGCTATCAATGGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAA 30150023 Query 183835 TCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTC 183894 |||||| || | ||||||| ||| |||||| ||| || || | || ||||| Sbjct 30150024 AATGAGTCTACTAATGAAGGTTACAGATTCAGTCAAGTAGACGAAACTCATAATATTGTA 30150083 Query 183895 GCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGT 183954 | ||| ||||| | ||||| | | |||| | |||||| || ||||||||| || Sbjct 30150084 GGTGCCCATGGTTTATTTGGCAGATTTATCTCACGATATGCTAGTTTCAACAATTCTTGT 30150143 Query 183955 TCTCTTCAC--TTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTG 184012 || ||| || || || | |||||||||| | ||||| |||| ||| ||||| | Sbjct 30150144 TC-CTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTCGGTATCTAGTTACCTGCTTTAC 30150202 Query 184013 GTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATG 184072 || | || |||||| | |||||||| |||||||| || | |||||| | | | || Sbjct 30150203 GTATCAGTACTATGACTTTTAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACA 30150262 Query 184073 GTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGG 184132 ||| ||| ||| | | || || | | || | |||| | || | ||| |||| Sbjct 30150263 ATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGG 30150322 Query 184133 AAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGAC 184173 |||| ||| | || |||||||||||||||||||||| ||| Sbjct 30150323 AAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGAC 30150363 >seq14 Length=24379743 Score = 156 bits (172), Expect = 5e-33 Identities = 241/344 (70%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 186345 GCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCCTCTT 186404 || ||||| || |||| ||| || ||||| |||||| | ||||||| || || || | Sbjct 16929123 GCAATTGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTATATTCCTGATTTATCCATTG 16929182 Query 186405 GGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTG 186464 || | || |||||||| || ||| ||||| || ||| | || ||| |||| | Sbjct 16929183 GGTCGATCTGGTTGGTTCTTTGCGCCCAATTTTGGTGTAGCAACTATATTTCTATTCATC 16929242 Query 186465 TTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCA 186524 | || ||||| | || | || ||||||||||| ||||| || |||||||| || || Sbjct 16929243 CTTTTTTTCCAAAGGTTTTATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCT 16929302 Query 186525 GGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTT 186584 || | | || | ||||||||| | || || ||||||| ||| |||||||||| | | Sbjct 16929303 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATATTTTA 16929362 Query 186585 TATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAA 186644 | |||||||| || ||||| |||||| | || || | | || |||| ||||| Sbjct 16929363 TTCGAAGATGGTGACGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAG 16929422 Query 186645 ACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTT 186688 || ||| ||||||||| | || || ||||| || ||||| Sbjct 16929423 ACTTATGTAATGGTCACTACTCACTACTTTTGGTCCCAAATCTT 16929466 >seq155 Length=683644 Score = 89.7 bits (98), Expect = 6e-13 Identities = 89/114 (78%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 186836 AGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACG 186895 ||| |||| |||||| ||||| ||||||||||| |||||| | || ||||||||| | || Sbjct 3687 AGAAGATCTTGAGTTTGAGACTTTCTATACCAAAAATATCTTCTTAAATGAAGGTATTCG 3746 Query 186896 TGCCTGGATGGCACCAGTGGATCAACCACATGAAAACTTTGTATTTCCTGAAGA 186949 ||| ||||||| | || ||||| |||||||| || || |||||| ||| Sbjct 3747 TGCTTGGATGGTGGCTTCAGAGCAACCTCATGAAAATCTTATA-TTCCTGGAGA 3799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621758890471320