Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5 158 1e-33 seq17 154 1e-32 seq6 150 2e-31 seq2 147 2e-30 seq14 138 1e-27 seq12 87.8 2e-12 seq10 86.0 6e-12 >seq5 Length=51955539 Score = 158 bits (174), Expect = 1e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || ||||| || ||| ||||||||| ||||||||||||| | Sbjct 10328040 CCACCGCGGAGGCGGAGGACTAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCG 10327981 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| |||||||| || |||||||| || |||||||| ||||||| ||| Sbjct 10327980 AGGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 10327921 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||| |||||| || | || || | ||| | | | ||||| ||||| || Sbjct 10327920 ATGCCCTCTTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 10327862 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || |||||||| ||||| ||||| |||||||| || Sbjct 10327861 CTCGAGGGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATCTT 10327811 >seq17 Length=6372654 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||||||||| ||||| | || || || || ||| ||||||||||||||| ||||||| Sbjct 622414 CGCCGCCGCGGAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGG 622355 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 |||||| || | || ||||||||||| |||||||| || |||||||| || || | || Sbjct 622354 CGAGGGTCCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGG 622295 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | | || |||||||||| ||| || ||| | | | |||||| ||||||| Sbjct 622294 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAAGACTCCA 622235 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || ||||| || || || ||||| ||||||||| Sbjct 622234 CCTCGAGGGTGATTGTCTTCCCCGTGAGGGTTTTCACGAAGATCTGCATG 622185 >seq6 Length=44357769 Score = 150 bits (166), Expect = 2e-31 Identities = 179/239 (75%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || ||| |||||| ||||||||||| |||| Sbjct 21860978 GCCTCCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTATAATCGGC 21861037 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| || ||||||||||||||||| ||||| ||||| ||||||| ||| Sbjct 21861038 GAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 21861097 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||| || ||| || | || || | ||| | | | ||||| |||||| | Sbjct 21861098 GATGCCCTCTTTATCC-TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGA 21861156 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCA--TGTTATCGA 41870 |||||| || || || || || || || ||||| ||||| ||||||| |||||| || Sbjct 21861157 CCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATCTGTTATAGA 21861215 Score = 136 bits (150), Expect = 4e-27 Identities = 171/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||||||||| || ||| |||||||||||| |||||||||| Sbjct 21860523 CCACCGCGAAGACGGAGCACCAGATGGAGGGTGGACTCCTTCTGAATATTATAGTCGGCA 21860582 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | |||| || |||||||| |||||||||||||| | ||| ||||||| ||| Sbjct 21860583 AGGGTCCTGCCGTCCTCAAGCTGCTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGCGGA 21860642 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTC---GCTCGACTC 41811 | | |||||| ||| ||| || ||| | | | | | || || ||| ||| Sbjct 21860643 ATCCCCTCCTTATCCTGGATCTTCGCCTTGACATTATCA-ATGGTATCCGAGCT---CTC 21860698 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| | || ||||| || ||||| || ||||| || || |||||||| Sbjct 21860699 CACCTCGAGGGTGATCGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGCAT 21860749 >seq2 Length=65558141 Score = 147 bits (162), Expect = 2e-30 Identities = 174/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || || || | || || || || ||| ||||||||| ||||| || |||| Sbjct 62822498 CGCCACCCCGGAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGG 62822557 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||||||| |||| ||||||||||| |||||||| || |||||||| ||||| | | Sbjct 62822558 CGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGTG 62822617 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || |||||||||| ||| || ||| ||| | | | |||||| ||||| Sbjct 62822618 GGATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAGGACTCT 62822676 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | || || || || ||||| || ||||| ||||| ||||||||||| Sbjct 62822677 ACCTCGAGGGTAATAGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATGTT 62822729 >seq14 Length=24379743 Score = 138 bits (152), Expect = 1e-27 Identities = 172/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||||||||| || || | || || || || ||| ||||||||| || || ||||||| Sbjct 6055573 CGCCGCCGCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGG 6055514 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||||||| | || ||||||||||| |||||||| || |||||||| || |||| | Sbjct 6055513 CGAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATAAGGCGCTGCTGATCCGGTG 6055454 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || |||||||||| || | || || | ||| | | | ||||| ||||| Sbjct 6055453 GGATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCG 6055395 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||||| || || || || || || || ||||| || || |||||||| || Sbjct 6055394 ACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATCTT 6055342 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||||||||| || || | || || || || ||| ||||||||| || || ||||||| Sbjct 6042274 CGCCGCCGCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGG 6042215 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||||||| | || |||||||||||||| ||||| || |||||||| || |||| | Sbjct 6042214 CGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTG 6042155 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || |||||||||| || | || || | ||| | | | ||||| ||||| Sbjct 6042154 GGATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATTGTGTCCGAGGACTCG 6042096 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | || || || || || || || ||||| || || |||||||| || Sbjct 6042095 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCATCTT 6042043 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || || ||||||||||| ||||| | Sbjct 11039670 CCACCACGGAGACGCAGGACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCTGCA 11039611 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || |||||||| ||||| || || |||||||| || || | ||| Sbjct 11039610 AGAGTGCGACCATCCTCCAGCTGCTTCCCGGCAAAGATGAGGCGCTGCTGATCAGGGGGT 11039551 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA-ACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| | |||| ||||| | | | | ||||| ||||| Sbjct 11039550 ATGCCCTCCTTGTCC-TGAATCTTTGTCTTCACATTATCA-ATGGTGTCAGAACTCTCCA 11039493 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || || | ||||| || || |||||||| Sbjct 11039492 CCTCCAAGGTAATTGTCTTCCCTGTTAAAGTCTTAACAAAGATCTGCAT 11039444 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||||||||| || || | || ||||| | || || || ||||| || || || Sbjct 11039406 TCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTCCATCCTCAAGTTGCTTTCCAGCAAAG 11039347 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || ||||| ||||| | || | | ||||||||| ||| | ||||| | || Sbjct 11039346 ATAAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCC-TGAATCTTTGCCTTGACATT 11039288 Query 41792 GAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTT 41847 | | ||||| ||| ||||||||||| || ||||| || || ||||| ||||| Sbjct 11039287 ATCAATGGTGTCAGAGCT---CTCCACCTCCAAAGTGATCGTCTTCCCTGTCAGAGTCTT 11039231 Query 41848 TACGAAAATCTGCAT 41862 || || |||||||| Sbjct 11039230 GACAAAGATCTGCAT 11039216 >seq12 Length=28800575 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || || ||| ||||||||||| ||||| | || ||||| | || || Sbjct 14032904 ACAAGATGGAGTGTCGACTCTTTCTGAATGTTGTAGTCAGCCAGTGTGCGACCATCCTCA 14032845 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 ||||| ||||||||||| || || | ||||||||| | ||| | || ||||||||| Sbjct 14032844 AGCTGTTTGCCGGCGAAAATAAGCCTCTGTTGGTCTGGGGGGATGCCCTCCTTGTC 14032789 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/198 (71%), Gaps = 10/198 (5%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| ||||| ||||||||||| | | ||||| | || || ||||| ||||| || || Sbjct 14035071 CTCTTTCTGGATGTTATAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGTTTGCCAGCAAA 14035012 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCA-AC 41788 || || | ||| ||||||| |||| || |||||||||| ||| | || | ||||| | Sbjct 14035011 GATGAGCCTCTGCTGGTCCGGCGGAATGCCCTCCTTGTCC-TGAATCTTAGCCTTCACAT 14034953 Query 41789 GACGACACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTC 41845 | | | ||||| ||| ||| || |||| || || || || || || || ||| Sbjct 14034952 TATCA-ATTGTGTCAGAGCT---CTCAACTTCCAGGGTGATGGTCTTGCCAGTAAGGGTC 14034897 Query 41846 TTTACGAAAATCTGCATG 41863 || || || ||||||||| Sbjct 14034896 TTCACAAAGATCTGCATG 14034879 Score = 82.4 bits (90), Expect = 7e-11 Identities = 163/236 (69%), Gaps = 18/236 (8%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || ||| || ||||| ||||| ||||| | | Sbjct 14079367 CCACCACGAAGGCGCAGGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGCG 14079308 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC-GGG 41754 ||||| || | || || |||||||| || || || || || | ||| ||||| | ||| Sbjct 14079307 AGGGTACGTCCATCCTCAAGCTGCTTACCAGCAAAAATGAGCCTCTGCTGGTCAGGAGGG 14079248 Query 41755 AACGCTCTCCTTGTCCATGATTTT----TTG-CTTCAACGACGACACAGTGTCGCTCGA- 41808 | | || ||||||||| ||| || ||| | | | ||| | ||||| ||| Sbjct 14079247 ATCCCT-TCCTTGTCCTGGATCTTGGCCTTGACATTATCGATG-----GTGTC---CGAG 14079197 Query 41809 --CTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| |||| || || || || || || || ||||| || ||||||||||| Sbjct 14079196 CTCTCCACTTCCAAAGTGATGGTCTTCCCAGTGAGGGTCTTCACAAAAATCTGCAT 14079141 >seq10 Length=31890735 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || |||||||||||||| || || |||| ||||| ||||| | ||| | || ||||||| Sbjct 15232353 TCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTG 15232412 Query 41768 TCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTAT 41826 ||| || | ||||| | ||| | | | || || ||||||||||| | || || Sbjct 15232413 TCC-TGGATCTTTGCCTTGACGTTGTCAATGGTATCCGAGGACTCCACCTCGAGGGTGAT 15232471 Query 41827 CGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || ||||| ||||| |||||||| Sbjct 15232472 GGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 15232507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462072495493200