Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq223 105 1e-17 seq785 104 5e-17 seq78 104 5e-17 seq112 102 2e-16 seq3 102 2e-16 seq269 98.7 2e-15 seq232 98.7 2e-15 seq558 95.1 3e-14 seq56 95.1 3e-14 seq16 95.1 3e-14 seq531 93.3 9e-14 >seq223 Length=929638 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 411516 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 411575 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 411576 CCCCACGGTGGGC 411588 >seq785 Length=346551 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 116430 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 116489 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 116490 CCCACGGTGGGC 116501 >seq78 Length=1440308 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 324741 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 324800 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 324801 CCCACGGTGGGC 324812 >seq112 Length=1333301 Score = 102 bits (112), Expect = 2e-16 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 || |||||||||||||||| ||||||||||| || || |||| || |||||||||||||| Sbjct 817169 GCATGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 817110 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 817109 GAGCCCCACGGTGGGC 817094 Score = 95.1 bits (104), Expect = 3e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||| ||||||||||| || || |||| || |||||||||||||||||| Sbjct 625039 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 625098 Query 165770 CCCACGATGG 165779 |||||| ||| Sbjct 625099 CCCACGGTGG 625108 >seq3 Length=3667290 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||| ||||||||||| || || |||| || |||||||||||||||| Sbjct 3223352 TTGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 3223293 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 3223292 GCCCCACGGTGGGC 3223279 >seq269 Length=736261 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||| ||||||| || || |||| || |||||||||||||||||| Sbjct 473549 GCCCGTCTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 473608 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 473609 CCCACGGTGGGC 473620 >seq232 Length=898664 Score = 98.7 bits (108), Expect = 2e-15 Identities = 67/74 (91%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 293440 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 293499 Query 165768 GCCCCACGATGGGC 165781 | |||||| ||||| Sbjct 293500 G-CCCACGGTGGGC 293512 >seq558 Length=490607 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| | ||||||||| |||||||| Sbjct 317941 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCCTGTGGTCGTGAGTTCGAGC 317882 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 317881 CCCACGGTGGGC 317870 >seq56 Length=1646278 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1491865 GCCCGTCTAGCTCAGCTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1491924 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1491925 CCCACGGTGGGC 1491936 >seq16 Length=2636605 Score = 95.1 bits (104), Expect = 3e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 1055918 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG- 1055976 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1055977 CCCACGGTGGGC 1055988 >seq531 Length=506089 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||| ||||||||||| || || |||| || ||||||||||||||||| Sbjct 378355 TGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 378296 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 378295 -CCCACGGTGGGC 378284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057461366032280