Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2335 104 3e-17 seq94 86.0 7e-12 >seq2335 Length=105124 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || || ||||| | || | ||| || | |||| |||| ||||||||||||| || ||| Sbjct 21880 CCCCCTTGATCAACATAACGAGCAGTATCATTAAAAACCCTCAACATTGGAACGATGCCA 21939 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 ||||||| ||||| ||||| |||||| || ||| | ||||||||||| | ||| Sbjct 21940 TTGGATGTCCCATTTGTCCCACGGATATAACTACCAGTTGCACGAATATTGTGAGCAGAT 21999 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | || | || || || ||| || | || || ||||| |||||||| ||| Sbjct 22000 ATGCCAACTCCTCCAGCAGATTTGCTTATAACAGCACACTCCTTTAAAGTATCATATATG 22059 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 ||||| || |||||||| ||||| || | || |||||| Sbjct 22060 CCCTCAATGCTATCATCTTTCATGCAAACCAAGAAGCAGCTA 22101 >seq94 Length=1461416 Score = 86.0 bits (94), Expect = 7e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| || ||||| | || | ||| || | |||| | || | || |||||||| ||| || Sbjct 1163987 TCCCCCTTGATCAACATAACGAGCAGTATCATTAAACACCCGCAGCATTGGAACAATGCC 1163928 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| || | ||||| ||||| ||||| || || ||||||| |||||| || ||| Sbjct 1163927 ATTAGAAGTTCCATTTGTCCCACGAATATAACTGCCTGTGGCACGTATATTATGAACTGA 1163868 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || || || | || ||| || || || ||||| || Sbjct 1163867 AACACCAATTCCTCCAGCAGACTTGCTTATGACAGCACATTCCTTCAAAGTGTCATATAT 1163808 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 ||||| ||||||||||| ||||| Sbjct 1163807 TCCCTCAATACTATCATCTTTCATG 1163783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593523029810880